Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq17656 141 6e-29 seq17300 87.8 1e-12 >seq17656 Length=11375 Score = 141 bits (156), Expect = 6e-29 Identities = 369/557 (66%), Gaps = 13/557 (2%) Strand=Plus/Plus Query 25412 GAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTG 25471 |||||| ||| || || || ||||| | |||||| || || ||||| || | ||| Sbjct 756 GAGCTGCTTCTGAAGAGGCTCAACGTGGTTCAGGTAAACATGCGCGTCACCAATCACGTG 815 Query 25472 GACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTA 25531 || || || || |||| ||||||| || | |||| | |||||| || ||| Sbjct 816 GATGAATTCACCTGGTTTCAGCCCGGCCACTTGTGCCACTAGCCGCGTGAGCAGCGCGTA 875 Query 25532 GCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGAC 25591 ||| || ||||| || || || |||| |||||||| | || | |||||| | ||| | Sbjct 876 GCTTGCAATGTTGAACGGCACGCCGAGTCCCATGTCGGCT-GAGCGCTGGTACATCTGGC 934 Query 25592 ACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTA 25651 | ||||||||| |||| |||||| ||||| || | ||| ||||| || || || | Sbjct 935 AGGAGAGCTCTCCGTCCGCCACGTAGAACTGGCAGAACATGTGACACGGTGGCAGCGCCA 994 Query 25652 TAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTG- 25710 | | || || |||||||| || ||| | || | | ||| |||||| Sbjct 995 TCTCGTTCAGATCGGCGGGGTTCCACGCAGACAAAACAATCCGGCGGTCGGTCGGGTTGG 1054 Query 25711 TCC----CTGATAAGATCCGCGGTGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGT 25765 ||| || | | ||| | | ||| | || ||||| ||| || | ||||| Sbjct 1055 TCCGCAGCTTGTGA-ATCACC-----TCAGCAAGTTGGTCCACACCCTGTCCAGTGTAGT 1108 Query 25766 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTC 25825 | || ||||||||| |||| ||||| || | | ||||||||| ||||| ||||||| Sbjct 1109 CCGCATGCATGTCCGTATACTTGGCTCCAAAGTGGCGCCACTGGAAGCCGTAGACCGGTC 1168 Query 25826 CTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCAT 25885 | ||||| || |||||| || || || | | |||||| | |||| || |||| Sbjct 1169 CAAGGTCGCCCACTTCCCGCGATTCCAACCCTCGACTGTCCAAATACTCTCGAGATCCAT 1228 Query 25886 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 25945 | |||||||||| | | |||||| ||| | | || ||| || || | Sbjct 1229 TTCCGTCCCAGATGTGGATATCCTTCTGCTGCAGCGTGTGCGCATTCGTGTCGCCACTAA 1288 Query 25946 CGAACCACAGCAGCTCC 25962 ||||||||||||||||| Sbjct 1289 CGAACCACAGCAGCTCC 1305 >seq17300 Length=26109 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 40784 GTTAAACAATATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 40843 ||| |||| || ||||| | |||||| | |||||| | ||| | ||| || || || Sbjct 14872 GTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCAGCGTCGATCACGCCCGCGCCCGT 14931 Query 40844 GTCTATAAAATTTTCCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 40903 ||| || || || | || || |||||||| | || ||||| | ||||| ||| | Sbjct 14932 GTCAATGAACTTCTTAAGTGCGAGGCCGGAGCGAGGCGCCACACGCGCGTAGCAGCCTGA 14991 Query 40904 GGGCATCTTTACGGCCAGGTCCGTCTTTACCAGGGCCCTGCCAAAGGAGGGGACCACGAC 40963 ||||| | || ||||||||||||| || ||| || |||| | ||||| |||| | Sbjct 14992 GGGCACCGCCACCACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCTGCGGGGATCACGGC 15051 Query 40964 CGGGTAAGCGGCCGCTAGGTC 40984 ||| ||||||| ||||| Sbjct 15052 GTCGTAGGCGGCCGACAGGTC 15072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340056627374409