Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7668 141 1e-29 seq12383 127 3e-25 seq19532 95.1 2e-15 seq9807 86.0 1e-12 seq6337 82.4 1e-11 >seq7668 Length=43896 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 36512 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 36453 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||||||||||| || |||||| |||| || | |||| || |||| Sbjct 36452 CCGTCGTCTCGCACGTCGTGGTGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 36393 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| || | | || || || Sbjct 36392 CCGCGGTGTGCTCAAGGTCTTCCTTGAGAACGTCATCCGCGACTCGGTTACGTACACGGA 36333 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| || || || ||||||| |||| || || | || ||||| || Sbjct 36332 GCACGCCCGCCGTAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGTCAGGG 36273 Query 16672 CCG 16674 ||| Sbjct 36272 CCG 36270 >seq12383 Length=8102 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 1998 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 2056 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||||||||| || || ||||| |||| || | |||| || |||| Sbjct 2057 TCCGTCGTCTCGCTCGTCGTGGCGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 2116 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | ||||| ||| ||| |||| || | | || || | Sbjct 2117 CGCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACTCGGTGACGTACACGG 2176 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || || || || ||||||| |||| || || | || ||||| | Sbjct 2177 AGCACGCTCGCCGCAAAACGGTGACAGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGG 2236 Query 16671 GCCG 16674 |||| Sbjct 2237 GCCG 2240 >seq19532 Length=7966 Score = 95.1 bits (104), Expect = 2e-15 Identities = 170/243 (70%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 16436 AAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCG 16494 |||||||||||| |||| |||||| || ||||| ||||| ||||||| |||||| |||| Sbjct 4753 AAGCGTCATCGCAAGAT-TCTTCGGGACAACATACAAGGCATCACCAGGCCAGCGATCCA 4811 Query 16495 TCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 ||||| |||||||| | ||| || || |||| || || ||||| | ||| || Sbjct 4812 ACGTCTTGCTCGTCGGGCTGGTGTGGTTCGGATCTCCGGCCTGATCTATCACGAGGCGCG 4871 Query 16555 TG--ATGTTTTGAAGATCTTCCTCAAGAC-CGTTATCCATGATGCTTTCCACTATACCGA 16611 | |||| ||| || | || || | |||| | |||||| || |||| | || Sbjct 4872 CGCAGTGTTGAGAACATTTCTGTCGAGTCTCGTT---CGCGATGCTATCACCTATGCGGA 4928 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| | || ||||| |||| ||||| || | || ||| | ||||| ||||| Sbjct 4929 GCACGGACACCGCAAGACGATCACAGGAATGGACGTCATTTACGCACTAAAACGCCAAGG 4988 Query 16672 CCG 16674 || Sbjct 4989 TCG 4991 >seq9807 Length=974 Score = 86.0 bits (94), Expect = 1e-12 Identities = 165/241 (68%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCAT-CGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || | || ||| || || |||||||||||||| || | | | | | | Sbjct 630 CGCGAAGCGCCACGCTCATATC-CTACGCGATAACATCCAAGGGATAAGTATGTCCTCCA 572 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | ||||| || || || || | || || | || | ||||| | |||| | |||| Sbjct 571 TTCGTCGACTAGCCCGACGAGCAGGGGTTATCCGCTTGTCTGGGGTCATCTACAACGAGA 512 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| ||||| | || || ||| |||| || ||||| || |||| | Sbjct 511 CTCGTGCGAGTTTGAGAGTATTTGTCGAGAATCTTATTCACGATGCGGTCATTTATATGG 452 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| || | |||| | || ||||| |||||||| |||| Sbjct 451 AGCACGCGAACCGCAAGACAGTCACGTCAAGGGATGTTGTATATGCTTTGAAACGCCAAG 392 Query 16671 G 16671 | Sbjct 391 G 391 >seq6337 Length=907 Score = 82.4 bits (90), Expect = 1e-11 Identities = 159/236 (67%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || | | | | | || ||||| ||||| || || | Sbjct 891 CTACGCGATAACATCCAAGGGATAAGTAGGTCCTCCATTCGTCGACTGGCCCGACGAGCA 832 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || | || | ||||| | |||| | |||| ||||| |||||| | || Sbjct 831 GGGGTTATTCGCTTGTCTGGGGTCATCTACAACGAGACTCGTGCGATTTTGAGAGTATTT 772 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || || |||| || ||||| || |||| |||||||| || || ||||| ||| Sbjct 771 GTCGGGAATCTTATTCACGATGCGGTCATTTATATGGAGCACGCGAACCGCAAGACAGTC 712 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTT 16689 || || | |||| | || ||||| ||||||| |||| | | | |||| || || Sbjct 711 ACGTCAAGGGATGTTGTATATGCTTTGAAACKCYAAGGTCAAACGCTTTACGGATT 656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79057340841369