Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq14049 147 3e-30 seq14048 147 3e-30 seq18936 122 1e-22 >seq14049 Length=3113 Score = 147 bits (162), Expect = 3e-30 Identities = 471/726 (65%), Gaps = 6/726 (1%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||||||||| || ||||| |||| | ||||| ||| | |||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACT 1366 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63255 ||||| || | ||| || || ||||| || || || || | ||| || || || || Sbjct 1365 CCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAA 1306 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 || || | | | || |||||| || ||||| ||||| |||||| | | Sbjct 1305 CAAG-TCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGA 1247 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 | || | ||||||||| |||||||| ||||| | ||| |||||| ||||| Sbjct 1246 ACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTC 1187 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 |||| || | || | ||| |||| ||| | ||||| | ||| || || || || || | Sbjct 1186 CCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGG 1127 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAG 63493 | || ||||| ||| ||| ||||| |||||||||||| | | | |||| Sbjct 1126 AGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGAT-- 1069 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 || || || || ||| || ||||| | ||||| | || | |||||| ||||| || Sbjct 1068 GCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCC 1009 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 ||| ||| || || |||| || | || || |||| || | || || Sbjct 1008 CTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGT 949 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 ||| |||||||| | || || | |||||||| || | || | || | || | ||| Sbjct 948 TCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 889 Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 ||||| | || | | || ||| | || || || | || || ||||| | ||| Sbjct 888 CGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCAT 829 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 ||||| || | || |||| ||| ||| | | | || | |||| | ||||| || Sbjct 828 CTGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACGT 769 Query 63794 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63853 || || ||||| |||| |||| |||||| | |||| ||||| |||||||||| | Sbjct 768 CTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCTC 709 Query 63854 ATCCTT 63859 ||||| Sbjct 708 GTCCTT 703 >seq14048 Length=3126 Score = 147 bits (162), Expect = 3e-30 Identities = 471/726 (65%), Gaps = 6/726 (1%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||||||||| || ||||| |||| | ||||| ||| | |||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACT 1366 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63255 ||||| || | ||| || || ||||| || || || || | ||| || || || || Sbjct 1365 CCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAA 1306 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 || || | | | || |||||| || ||||| ||||| |||||| | | Sbjct 1305 CAAG-TCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGA 1247 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 | || | ||||||||| |||||||| ||||| | ||| |||||| ||||| Sbjct 1246 ACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTC 1187 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 |||| || | || | ||| |||| ||| | ||||| | ||| || || || || || | Sbjct 1186 CCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGG 1127 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAG 63493 | || ||||| ||| ||| ||||| |||||||||||| | | | |||| Sbjct 1126 AGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGAT-- 1069 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 || || || || ||| || ||||| | ||||| | || | |||||| ||||| || Sbjct 1068 GCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCC 1009 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 ||| ||| || || |||| || | || || |||| || | || || Sbjct 1008 CTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGT 949 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 ||| |||||||| | || || | |||||||| || | || | || | || | ||| Sbjct 948 TCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 889 Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 ||||| | || | | || ||| | || || || | || || ||||| | ||| Sbjct 888 CGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCAT 829 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 ||||| || | || |||| ||| ||| | | | || | |||| | ||||| || Sbjct 828 CTGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACGT 769 Query 63794 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63853 || || ||||| |||| |||| |||||| | |||| ||||| |||||||||| | Sbjct 768 CTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCTC 709 Query 63854 ATCCTT 63859 ||||| Sbjct 708 GTCCTT 703 >seq18936 Length=24579 Score = 122 bits (134), Expect = 1e-22 Identities = 305/456 (67%), Gaps = 13/456 (3%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || || ||||| || ||||| ||||| || | ||| || |||||||| || | Sbjct 21003 ACAGCAGGCACGCGAAGTCCGTGTGCATGCCCTCATCACGACTGATGAGTTCGTTCGAGA 20944 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | | || || ||||| || || ||||| || ||||| || || || ||| || || | Sbjct 20943 AGCTCAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCG 20884 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG-CTG 33474 | ||||| || || ||||| || || || || | || | ||| || || || | Sbjct 20883 AGAAGAAAATGCCCTCTACCGCGGCGAACGCCAGCAGACGCTCAGGGTA--CGACGACAC 20826 Query 33475 TCATGTATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 | | || ||| ||||||| |||||||| | || || || ||||| || Sbjct 20825 ACGAGGGTCGCACCACCGAAGAGCCCAGCGAGCCTTCTTCTCCACGCACGGGATCGTCTC 20766 Query 33531 TATGGCATTAAAGAGATAGtttttttC-ATTACTATCTTTAACATAAGTATCGATCAAAA 33589 ||||| | | ||| | || || | | | ||| || | || || ||||||| | Sbjct 20765 GATGGCTCGCAGCAAATAATCCTTCTCCACTGC-ATCCTTGATGTACGTGTCGATCAGCA 20707 Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649 | ||||| |||||| || ||||| || ||||| ||||| || |||||||| || | || Sbjct 20706 GCGAATACACTTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAG 20647 Query 33650 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCC 33707 | || | | ||| || || | | || |||| |||| || || ||||| || || Sbjct 20646 CTTCCGGCACCTGCACCTCGTTGCTGAA--GTTCATTGCCAGGTTCTCGTTCACGATGCC 20589 Query 33708 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33743 ||||||||| ||||| ||||||| || || || || Sbjct 20588 GTCACTGGCAGCAAAGAACGCCAGCACGTGCTTGAT 20553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622795099654280