Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq14049 318 2e-81 seq14048 318 2e-81 seq17656 129 2e-24 >seq14049 Length=3113 Score = 318 bits (352), Expect = 2e-81 Identities = 876/1334 (66%), Gaps = 9/1334 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| ||||| || ||| ||||| ||||| | || ||| |||| || Sbjct 913 TTCACGCACGCGACGCCCACGCTGTTTAATGCAGGAACGCCGCGCCCGCAGCTGTCGTCG 972 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | || ||| ||||||| ||||| ||||| |||| ||||| || ||| | Sbjct 973 TGCTTCTTGCTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAG 1032 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || ||||| | || |||||| ||||||| Sbjct 1033 TGCGCGTGCATCTCCAAGTGGGCTGGAGGTATTGGCATCAGTATGCACAATATTCGTGCC 1092 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 |||||| ||||| |||||||| || | ||| |||||| | | |||||||| | Sbjct 1093 ACGAACAGCTACATCCGCGGCACCAACGGCTCCTCCAATGGGATCATCCCCATGCTCAGA 1152 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || | || || | || || |||||||| ||||| || ||||| || |||| Sbjct 1153 GTGTTTAACGACACGGCTCGCTATGTGGACCAGGGAGGAGGCAAACGCAAGGGATCGTTC 1212 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || | ||||| |||||||| | || ||||| || || || || || ||| Sbjct 1213 GCCATTTACTTGGAGCCGTGGCATGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAAC 1272 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| ||||| || || ||||||| || || ||||| | |||| Sbjct 1273 CACGGTAACGAGCTGCACCGTGCGCGCGACTTGTTCTACGCCCTGTGGGTGCCCGACCTG 1332 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || ||||||||||| ||||| | || ||| | || || || ||||| ||| Sbjct 1333 TTCATGAAGCGCGTCGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCGAACGAAGCTCCT 1392 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 | ||| | | | |||||||| || | | | || ||||| ||||| || |||| Sbjct 1393 GATCTCTACAAGTGCTGGGGTGAGGAGTTCGAAACGCTGTACGAGAAGTACGAGAAGGAG 1452 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 ||| || || ||||| || ||| ||| |||| ||||| |||||| |||| ||||| Sbjct 1453 GGACGTGCCCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAG 1512 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 |||||||| || || | ||| | ||||| || || |||||||||||| |||||| Sbjct 1513 ATTGAGACGGGCGTGCCGTTCATGCTCTACAAGGACGCGGCCAACCGCAAGTCGAACCAG 1572 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| |||| || || || | |||||| | || ||| | || || ||||| | Sbjct 1573 CAGAACCTCGGCACGATCCGCTCTAGCAACTTGTGCTGTGAGGTGATGGAGTACACGTCA 1632 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 || |||||| || || || ||||| || || | || || || ||| || | ||| Sbjct 1633 CCAGACGAGGTGGCGGTGTGCAACCTGGCCTCTGTGGCCCTGCCCAAGTTCGTGGAGGAT 1692 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGAC 364386 || || || ||||| | || || || || ||| | | ||| | || || || Sbjct 1693 GGCGTGTTCAACTACCAGAAACTGTACGAGGTGACCAAGGTGGTCACTCGTAACCTGAAC 1752 Query 364387 AAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGTCA 364445 ||||| || ||| || || || || || | || || || || || |||||||| Sbjct 1753 AAGGTCATTGACGTCAACTACTA-CCCGGTCGCGGAGGCGCGCAAGTCCAACATGCGTCA 1811 Query 364446 TCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGC 364505 || ||| |||| |||| || ||||| || ||||||| ||||| | | || || Sbjct 1812 CCGTCCGGTTGGCATTGGCGTCCAGGGTCTTGCTGACGCCTTTATCCTCATGAACTACGC 1871 Query 364506 ATTTGATTCGCCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTG 364564 |||||| || | | || |||| || || ||| | || || || || || || | | Sbjct 1872 ATTTGA-GAGCGAGCAGGCCCGTGAACTTAACAAGAACATTTTCGAGACGATCTACTACG 1930 Query 364565 CCGCAATGACTGCTTC-GTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623 | | ||| | || || | | | ||| | | ||| |||| || | || Sbjct 1931 CTTCGATGGAGACGTCAATGGAAATCGCCAAGGAGC-TGGGCCCGTACGAGACGTTCCAG 1989 Query 364624 GGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCA---CGCCATCT 364680 || || ||| |||| | |||||||| || | ||| || | || | ||| Sbjct 1990 GGCTCGCCTGCAAGCAAGGGCATCTTCCAGTTCGACATGTGGGGCGTGACTCCGTCTTCT 2049 Query 364681 GTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCC 364740 | || ||| |||||| | | || || || | ||||| || |||||||| Sbjct 2050 GGCCTTTGGGACTGGGCTGCACTCAAGGAGAATGTGATCAAGCACGGCCTGCGCAACTCG 2109 Query 364741 CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGC 364800 || | || || |||||||| ||||| || || ||||| ||||| |||||||||| | Sbjct 2110 CTGCTCGTGGCTCCTATGCCCACTGCTTCGACGGCCCAGATTCTCGGCAACAACGAGTCC 2169 Query 364801 TTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTA 364860 | || ||||| || ||| | || ||||| || || |||| || || || | Sbjct 2170 ATTGAGCCGTTCACGTCCAACATGTACAACCGCCGTGTGCTGGCCGGCGAGTTCACGATC 2229 Query 364861 GTTAATAAGTACCT 364874 || || |||||||| Sbjct 2230 GTGAACAAGTACCT 2243 >seq14048 Length=3126 Score = 318 bits (352), Expect = 2e-81 Identities = 876/1334 (66%), Gaps = 9/1334 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| ||||| || ||| ||||| ||||| | || ||| |||| || Sbjct 913 TTCACGCACGCGACGCCCACGCTGTTTAATGCAGGAACGCCGCGCCCGCAGCTGTCGTCG 972 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | || ||| ||||||| ||||| ||||| |||| ||||| || ||| | Sbjct 973 TGCTTCTTGCTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAG 1032 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || ||||| | || |||||| ||||||| Sbjct 1033 TGCGCGTGCATCTCCAAGTGGGCTGGAGGTATTGGCATCAGTATGCACAATATTCGTGCC 1092 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 |||||| ||||| |||||||| || | ||| |||||| | | |||||||| | Sbjct 1093 ACGAACAGCTACATCCGCGGCACCAACGGCTCCTCCAATGGGATCATCCCCATGCTCAGA 1152 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || | || || | || || |||||||| ||||| || ||||| || |||| Sbjct 1153 GTGTTTAACGACACGGCTCGCTATGTGGACCAGGGAGGAGGCAAACGCAAGGGATCGTTC 1212 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || | ||||| |||||||| | || ||||| || || || || || ||| Sbjct 1213 GCCATTTACTTGGAGCCGTGGCATGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAAC 1272 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| ||||| || || ||||||| || || ||||| | |||| Sbjct 1273 CACGGTAACGAGCTGCACCGTGCGCGCGACTTGTTCTACGCCCTGTGGGTGCCCGACCTG 1332 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || ||||||||||| ||||| | || ||| | || || || ||||| ||| Sbjct 1333 TTCATGAAGCGCGTCGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCGAACGAAGCTCCT 1392 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 | ||| | | | |||||||| || | | | || ||||| ||||| || |||| Sbjct 1393 GATCTCTACAAGTGCTGGGGTGAGGAGTTCGAAACGCTGTACGAGAAGTACGAGAAGGAG 1452 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 ||| || || ||||| || ||| ||| |||| ||||| |||||| |||| ||||| Sbjct 1453 GGACGTGCCCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAG 1512 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 |||||||| || || | ||| | ||||| || || |||||||||||| |||||| Sbjct 1513 ATTGAGACGGGCGTGCCGTTCATGCTCTACAAGGACGCGGCCAACCGCAAGTCGAACCAG 1572 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| |||| || || || | |||||| | || ||| | || || ||||| | Sbjct 1573 CAGAACCTCGGCACGATCCGCTCTAGCAACTTGTGCTGTGAGGTGATGGAGTACACGTCA 1632 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 || |||||| || || || ||||| || || | || || || ||| || | ||| Sbjct 1633 CCAGACGAGGTGGCGGTGTGCAACCTGGCCTCTGTGGCCCTGCCCAAGTTCGTGGAGGAT 1692 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGAC 364386 || || || ||||| | || || || || ||| | | ||| | || || || Sbjct 1693 GGCGTGTTCAACTACCAGAAACTGTACGAGGTGACCAAGGTGGTCACTCGTAACCTGAAC 1752 Query 364387 AAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGTCA 364445 ||||| || ||| || || || || || | || || || || || |||||||| Sbjct 1753 AAGGTCATTGACGTCAACTACTA-CCCGGTCGCGGAGGCGCGCAAGTCCAACATGCGTCA 1811 Query 364446 TCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGC 364505 || ||| |||| |||| || ||||| || ||||||| ||||| | | || || Sbjct 1812 CCGTCCGGTTGGCATTGGCGTCCAGGGTCTTGCTGACGCCTTTATCCTCATGAACTACGC 1871 Query 364506 ATTTGATTCGCCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTG 364564 |||||| || | | || |||| || || ||| | || || || || || || | | Sbjct 1872 ATTTGA-GAGCGAGCAGGCCCGTGAACTTAACAAGAACATTTTCGAGACGATCTACTACG 1930 Query 364565 CCGCAATGACTGCTTC-GTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623 | | ||| | || || | | | ||| | | ||| |||| || | || Sbjct 1931 CTTCGATGGAGACGTCAATGGAAATCGCCAAGGAGC-TGGGCCCGTACGAGACGTTCCAG 1989 Query 364624 GGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCA---CGCCATCT 364680 || || ||| |||| | |||||||| || | ||| || | || | ||| Sbjct 1990 GGCTCGCCTGCAAGCAAGGGCATCTTCCAGTTCGACATGTGGGGCGTGACTCCGTCTTCT 2049 Query 364681 GTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCC 364740 | || ||| |||||| | | || || || | ||||| || |||||||| Sbjct 2050 GGCCTTTGGGACTGGGCTGCACTCAAGGAGAATGTGATCAAGCACGGCCTGCGCAACTCG 2109 Query 364741 CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGC 364800 || | || || |||||||| ||||| || || ||||| ||||| |||||||||| | Sbjct 2110 CTGCTCGTGGCTCCTATGCCCACTGCTTCGACGGCCCAGATTCTCGGCAACAACGAGTCC 2169 Query 364801 TTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTA 364860 | || ||||| || ||| | || ||||| || || |||| || || || | Sbjct 2170 ATTGAGCCGTTCACGTCCAACATGTACAACCGCCGTGTGCTGGCCGGCGAGTTCACGATC 2229 Query 364861 GTTAATAAGTACCT 364874 || || |||||||| Sbjct 2230 GTGAACAAGTACCT 2243 >seq17656 Length=11375 Score = 129 bits (142), Expect = 2e-24 Identities = 365/551 (66%), Gaps = 15/551 (3%) Strand=Plus/Minus Query 111407 TGCAGCAAAAA-ATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAG 111465 ||||||| || || | | || ||||| ||||||||||| || || | | | || ||| Sbjct 1261 TGCAGCAGAAGGATATCCACATCTGGGACGGAAATGGATCTCGAGAGTATTTGGA--CAG 1204 Query 111466 TTG-GTCTTG---TCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGG 111521 | | | ||| ||| |||| || || || ||||| || ||||| || || ||| Sbjct 1203 TCGAGGGTTGGAATCGCGG--GAAGTGGGCGACCTTGGACCGGTCTACGGCTTCCAGTGG 1146 Query 111522 CGCCACTTTGGTGCAGACTACAAAACCATGCACGACTCATATGATTCACAGGGAACTGAT 111581 ||||||||||| || | || | |||||| | || | |||||| || Sbjct 1145 CGCCACTTTGGAGCCAAGTATACGGACATGCATGCGGACTACACTGGACAGGGTGTGGAC 1086 Query 111582 CAA-TTACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTAT 111640 ||| || | || || ||| | | | || |||||| || || || ||| || | Sbjct 1085 CAACTTGCTGAG-GTGATTCACAAGCTGCGGACCAACCCGACCGACCGCCGGATTGTTTT 1027 Query 111641 GAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTG 111700 | ||| |||||||| | || | | ||||| || ||||| ||||| | | || Sbjct 1026 GTCTGCGTGGAACCCCGCCGATCTGAACGAGATGGCGCTGCCACCGTGTCACATGTTCTG 967 Query 111701 CCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||| || || ||||| ||| || ||||| ||||| ||||| || || || || Sbjct 966 CCAGTTCTACGTGGCGGACGGAGAGCTCTCCTGCCAGATGTACCAGCGCTCAGCCGACAT 907 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || || || || ||||| || |||||||| ||||| || || || | || | || || Sbjct 906 GGGACTCGGCGTGCCGTTCAACATTGCAAGCTACGCGCTGCTCACGCGGCTAGTGGCACA 847 Query 111821 TTTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACAC 111880 | | || ||||| ||||||||||| ||||| || || || |||||||||||| Sbjct 846 AGTGGCCGGGCTGAAACCAGGTGAATTCATCCACGTGATTGGTGACGCGCATGTTTACCT 787 Query 111881 AAACCACATTGATGCACTTAAAACACAGTTGAAGCGCAAACCATACG--ATTTCCCAACG 111938 |||||| |||| | ||| | | ||| | | ||| |||| ||| ||||| ||| Sbjct 786 GAACCACGTTGAGCCTCTTCAGAAGCAGCTCA--CGCGAACCCCACGGCCATTCCCGACG 729 Query 111939 ATTCATATCAA 111949 |||| || || Sbjct 728 CTTCACATTAA 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303027414174806