Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq18510 123 2e-23 seq19195 98.7 8e-16 seq17350 86.0 5e-12 >seq18510 Length=33167 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||| ||| |||||||| || |||||||||||| | Sbjct 31715 CCACCACGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTC 31656 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || ||||| || | || || ||||| ||||| || Sbjct 31655 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 31596 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||| | ||||||||| | | | | || ||| ||||||| Sbjct 31595 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACG 31536 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||| || || || |||||||| ||||| || |||||||| ||| Sbjct 31535 TCGAGGGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTTG 31485 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||| ||| |||||||| || |||||||||||| | Sbjct 31943 CCACCACGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTC 31884 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || ||||| || | || || ||||| ||||| || Sbjct 31883 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 31824 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||| | ||||||||| | | | | || ||| ||||||| Sbjct 31823 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACG 31764 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || |||||||| ||||| || |||||||| Sbjct 31763 TCGAGGGTGATTGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31717 >seq19195 Length=70740 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | |||||||| ||||||||||| |||||||||||| Sbjct 21579 CCGCCACGCAGACGCAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCGCTT 21638 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || ||||| || | || | ||||| ||||| || Sbjct 21639 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGG 21698 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| |||| ||||||||| | | | | | ||| |||||| Sbjct 21699 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 21758 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || || || |||| ||| || || || |||||||| Sbjct 21759 TCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 21805 >seq17350 Length=35721 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 16746 CCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAA 16805 |||| || ||||||||||| | | || | ||||||| | || ||||| || | | Sbjct 6403 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6462 Query 16806 TAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGC 16865 | || ||||| ||||| || | |||||| ||||| |||| |||||| || | | Sbjct 6463 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 6522 Query 16866 CCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAA 16925 | | ||||| |||||| |||| |||||||| || || ||||| || || |||| Sbjct 6523 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 6582 Query 16926 AAATCTGCAT 16935 | |||||||| Sbjct 6583 AGATCTGCAT 6592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404991565383670