Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq5267 129 3e-25 >seq5267 Length=12072 Score = 129 bits (142), Expect = 3e-25 Identities = 334/502 (67%), Gaps = 19/502 (4%) Strand=Plus/Plus Query 65552 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 65611 |||| || || || |||||| | | ||| | | |||||||||||||| || || ||| Sbjct 6890 GCCTTTATTGATGCAGAGCACGCTATTGACGCCCACTACGCCAAGGCGCTGGGCGTCGAC 6949 Query 65612 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 65671 ||||| || || ||||||||| | |||||| | || |||||||||| |||| Sbjct 6950 ATCGACGCGCTGTACGTCTCACAGCCGGACTCGGGCGAGGAAGCGCTGGAGATCGCTGAC 7009 Query 65672 CTCCTCGTCAAGTCTGGCGAGCTGTCCATC--GTCGTCGTTGACTCTGTGGCGGCCCTGG 65729 ||| || |||||| ||| || ||| || || | ||| ||||||||| || | Sbjct 7010 ACTCTCATCCGGTCTGG--AGCAGTGGATCTGGTGGTGCTCGACAGTGTGGCGGCTCTTG 7067 Query 65730 TGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCC 65789 ||||||| || ||||| || || || || || ||| || | | ||||| || || | Sbjct 7068 TGCCGCGAGCTGAGCTGGAGGGTGAGATGGGAGACCAGCAGATTGCGCTGCAGGCTCGGC 7127 Query 65790 TCATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGA 65846 | ||| ||||| | ||||||||||| || | | |||| |||| ||| | | Sbjct 7128 TTATGAGCCAGGCACTACGCAAGCTCACGGGGTCGTTGTCCAAGTCCAACTGCACCATTA 7187 Query 65847 CGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAACG 65903 | | | |||||| | ||| ||||| | || || | | || | |||||| | Sbjct 7188 ---TTTTCCTGAACCAGATCCGCCAGAAGGTGGGTATCATCTTTGGGT--CACCCGAA-G 7241 Query 65904 AGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTC 65963 ||| || || |||| || || | | |||||| || || || ||||| |||| | Sbjct 7242 TGACTTCC---GGTGGCACTGCGCTGCGTTACTACGCGTCGGTGCGGCTGGATATCCGCC 7298 Query 65964 GCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCG 66023 ||| | || ||||| ||||| | | || |||||| || ||| || || | Sbjct 7299 GCAAGACGGCCATCAAGGAGGGCGACCAAGTCGTGGGCAACGAAACGGTGGTAAAAGTAG 7358 Query 66024 TCAAGAACAAGCTGGCCCCGCC 66045 |||||||||||||||| |||| Sbjct 7359 CCAAGAACAAGCTGGCCTCGCC 7380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238164089528572