Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq14049 156 5e-33 seq14048 156 5e-33 seq18936 107 2e-18 >seq14049 Length=3113 Score = 156 bits (172), Expect = 5e-33 Identities = 473/726 (65%), Gaps = 6/726 (1%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||||||||| || ||||| |||| || ||||| ||| | |||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACT 1366 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63110 ||||| || | ||| || || ||||| || || || || | ||| || || || || Sbjct 1365 CCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAA 1306 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63170 || || | | | || |||||| || ||||| ||||| |||||| | | Sbjct 1305 CAAG-TCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGA 1247 Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63230 | || | ||||||||| |||||||| ||||| | ||| |||||| ||||| Sbjct 1246 ACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTC 1187 Query 63231 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 63290 |||| || | || | ||| |||| ||| | ||||| | ||| || || || ||||||| Sbjct 1186 CCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGG 1127 Query 63291 ATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAG 63348 | | || ||||| || ||| ||||| |||||||||||| | | | |||| Sbjct 1126 AGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGAT-- 1069 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 || || || || ||| || ||||| | ||||| | || | ||| || |||||||| Sbjct 1068 GCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCC 1009 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 ||| || || ||| |||| || | || || |||| || | || || Sbjct 1008 CTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGT 949 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 ||| |||||||| | || || | ||||| || || | || | || | || | ||| Sbjct 948 TCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 889 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 ||||| | || | | || ||| | || || || | || || ||||| | ||| Sbjct 888 CGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCAT 829 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 ||||| || | || |||| ||| ||| | | | || | |||| | ||||| || Sbjct 828 CTGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACGT 769 Query 63649 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63708 || || ||||| |||| |||| |||||| | |||| ||||| |||||||||| | Sbjct 768 CTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCTC 709 Query 63709 ATCCTT 63714 ||||| Sbjct 708 GTCCTT 703 >seq14048 Length=3126 Score = 156 bits (172), Expect = 5e-33 Identities = 473/726 (65%), Gaps = 6/726 (1%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||||||||| || ||||| |||| || ||||| ||| | |||||| | ||| Sbjct 1425 TTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACT 1366 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63110 ||||| || | ||| || || ||||| || || || || | ||| || || || || Sbjct 1365 CCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAA 1306 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63170 || || | | | || |||||| || ||||| ||||| |||||| | | Sbjct 1305 CAAG-TCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGA 1247 Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63230 | || | ||||||||| |||||||| ||||| | ||| |||||| ||||| Sbjct 1246 ACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTC 1187 Query 63231 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 63290 |||| || | || | ||| |||| ||| | ||||| | ||| || || || ||||||| Sbjct 1186 CCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGG 1127 Query 63291 ATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAG 63348 | | || ||||| || ||| ||||| |||||||||||| | | | |||| Sbjct 1126 AGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTGAT-- 1069 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 || || || || ||| || ||||| | ||||| | || | ||| || |||||||| Sbjct 1068 GCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCC 1009 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 ||| || || ||| |||| || | || || |||| || | || || Sbjct 1008 CTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGT 949 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 ||| |||||||| | || || | ||||| || || | || | || | || | ||| Sbjct 948 TCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 889 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 ||||| | || | | || ||| | || || || | || || ||||| | ||| Sbjct 888 CGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCAT 829 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 ||||| || | || |||| ||| ||| | | | || | |||| | ||||| || Sbjct 828 CTGCTGGGGGCGCTCCACGACTTTGCCGTTCACTCTGAAGAGGTAGCCCCTCTCCAACGT 769 Query 63649 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63708 || || ||||| |||| |||| |||||| | |||| ||||| |||||||||| | Sbjct 768 CTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCTC 709 Query 63709 ATCCTT 63714 ||||| Sbjct 708 GTCCTT 703 >seq18936 Length=24579 Score = 107 bits (118), Expect = 2e-18 Identities = 304/457 (67%), Gaps = 15/457 (3%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| || || ||||| || ||| | ||||| || | ||| || | |||||| || | Sbjct 21003 ACAGCAGGCACGCGAAGTCCGTGTGCATGCCCTCATCACGACTGATGAGTTCGTTCGAGA 20944 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | | || || ||||| || || ||||| || ||||| || || || ||| || || || Sbjct 20943 AGCTCAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGA-GCAGAACGAGCCC 20885 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG-CT 32830 || |||||||| || ||||| || || || || | || | ||| || || || | Sbjct 20884 GAGAAGAAAATGCCCTCTACCGCGGCGAACGCCAGCAGACGCTCAGGGTA--CGACGACA 20827 Query 32831 GTCATGTATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 | | || ||| ||||||| |||||||| | || || || || |||| Sbjct 20826 CACGAGGGTCGCACCACCGAAGAGCCCAGCGAGCCTTCTTCTCCACGCACGGGATCGTCT 20767 Query 32887 CTATAGCATTAAAGAGATAGtttttttC-ATTACTATCTTTAACATATGTATCAATCAAA 32945 | || || | | ||| | || || | | | ||| || | || || || |||| Sbjct 20766 CGATGGCTCGCAGCAAATAATCCTTCTCCACTGC-ATCCTTGATGTACGTGTCGATCAGC 20708 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 || ||||| |||||| || ||||| || ||||| || || || ||||||||||| | | Sbjct 20707 AGCGAATACACTTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGA 20648 Query 33006 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTC 33063 || || | | ||| || || | | || |||| ||| | || || ||||| || | Sbjct 20647 GCTTCCGGCACCTGCACCTCGTTGCTGAA--GTTCATTGCCAGGTTCTCGTTCACGATGC 20590 Query 33064 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33100 |||||||||| ||||| ||||||| || || || || Sbjct 20589 CGTCACTGGCAGCAAAGAACGCCAGCACGTGCTTGAT 20553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633477290826800