Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq14049 104 2e-17 seq14048 104 2e-17 seq17350 100 2e-16 seq19195 98.7 8e-16 >seq14049 Length=3113 Score = 104 bits (114), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 129984 CGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTAC 130043 |||||| | |||||||||| | |||| || ||||| || ||||| |||| ||||| || Sbjct 1380 CGGACAGAACAAACTCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCAC 1321 Query 130044 CCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACC---CATGTTACGTTT 130100 |||||||||||| ||||| || ||||| |||| ||| | ||||| Sbjct 1320 CCACAGGGCGTAGAACAAGTCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACG--- 1264 Query 130101 CAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC 130160 ||| || ||||| ||| | | |||||| |||||||| || | ||||| || | | || Sbjct 1263 CAGATCCAGGAACTCGAACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCC 1204 Query 130161 CTTCCGTTTGCCCCCT---TGGTCAACGTGGCG 130190 ||| |||||||| ||| ||||| || | ||| Sbjct 1203 CTTGCGTTTGCCTCCTCCCTGGTCCACATAGCG 1171 >seq14048 Length=3126 Score = 104 bits (114), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 129984 CGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTAC 130043 |||||| | |||||||||| | |||| || ||||| || ||||| |||| ||||| || Sbjct 1380 CGGACAGAACAAACTCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCAC 1321 Query 130044 CCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACC---CATGTTACGTTT 130100 |||||||||||| ||||| || ||||| |||| ||| | ||||| Sbjct 1320 CCACAGGGCGTAGAACAAGTCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACG--- 1264 Query 130101 CAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC 130160 ||| || ||||| ||| | | |||||| |||||||| || | ||||| || | | || Sbjct 1263 CAGATCCAGGAACTCGAACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCC 1204 Query 130161 CTTCCGTTTGCCCCCT---TGGTCAACGTGGCG 130190 ||| |||||||| ||| ||||| || | ||| Sbjct 1203 CTTGCGTTTGCCTCCTCCCTGGTCCACATAGCG 1171 >seq17350 Length=35721 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || ||||| | || Sbjct 6592 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 6533 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | ||| | |||| || ||||| || ||||||||||| || || || || || Sbjct 6532 GACAGCATTGACAACGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 6473 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| |||| || |||||| Sbjct 6472 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 6413 Query 22399 ATTCAAAA 22406 || || || Sbjct 6412 ATCCAGAA 6405 >seq19195 Length=70740 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || ||| |||| || || ||||| | | Sbjct 21805 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 21746 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || ||||| |||||||||||||| || || || || || Sbjct 21745 GACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 21686 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || |||||||| ||| | ||||| |||||| | ||| |||||| Sbjct 21685 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTAAGCGACTACAAC 21626 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || || | || |||| |||| |||| || || Sbjct 21625 ATCCAAAAGGAGTCTACGCTGCACCTAGTGCTGCGTCTGCGTGGCGG 21579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || || || || || || || ||| |||| || || ||||| | | || | | Sbjct 22252 TTCGTGAAGACGTTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCGGACTCGATC 22193 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || | || || ||||| |||||||||||||| || || || || || || ||| | Sbjct 22192 GACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTG 22133 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCA 22403 || || |||||||| ||| | ||||| |||||| | ||| |||||||| || Sbjct 22132 ATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTAAGCGACTACAACATCCA 22077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419628080208145