Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq18578 150 4e-31 seq18936 120 6e-22 seq17703 116 8e-21 seq14049 86.0 1e-11 seq14048 86.0 1e-11 seq13395 84.2 4e-11 >seq18578 Length=55264 Score = 150 bits (166), Expect = 4e-31 Identities = 441/670 (66%), Gaps = 22/670 (3%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||| | || |||||||||||||||||||| ||| || |||| || || || | | Sbjct 18468 GTCGGTACCCTTTCGGGTGGTTGGAAGATGAAATTGGAGCTGGCTCGTGCTATGCTGCAG 18409 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| | || || ||||| || || || |||||| |||| || || || ||| Sbjct 18408 AAGGCCGACATTCTGCTTCTTGACGAACCCACGAACCACTTGGATGTCAAGAATGTCGCC 18349 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| || || ||| ||| || | | |||| || || |||||| Sbjct 18348 TGGCTGGAGAACTACCTGACGAGCCTGCCGAACGTGACGAGCATCATGGTGTCGCACGAC 18289 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAG 279932 || |||||||| || | || ||| | |||||||||||| ||| | || || ||| Sbjct 18288 TCCGGCTTCCTCGACACGGTTTGCACGAACATCATTCACTACGAGACCCGTAAGCTAAAG 18229 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 ||| |||| |||||||| || ||||||| || |||||||| ||| Sbjct 18228 ATCTACAAG------GGCAACCTCTCAAGGTTCGTGGAGCAGAAGCCTGAGGCCAAGGCC 18175 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| || ||| || | || || |||| ||||| ||||| || || || | Sbjct 18174 TACTACGAGCTGGAGTCGGACAACGTTAAGTTCACGTTCCCGGAGCCTGGTTTCCTTGCT 18115 Query 280053 GGCATC-ACATCAAAGGATCGCGCAATCAT-GAAGCTCCGTGGCGTCTCCTTTGCTTATC 280110 | |||| | | ||| || || || | | || || | | | | || | Sbjct 18114 GACATCAAGAACAAGGGTAAGCCCATTATTCGATTGACC--AACTGCACGTACCAGTACC 18057 Query 280111 CCAATGGCCCCAA--CATC-TTCAGCAGTGTCAACTCG--CAGGT-TTCTATGAACTCAC 280164 | || ||| || | || ||| || || ||| | || || || | | Sbjct 18056 CTGGTGCCCCTAAGCCGTCGATCAACA---ACATTTCGGTGACGTGCGCTCTGTCCAGCC 18000 Query 280165 GGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTG 280224 | || | ||| | |||||||| ||||| ||||| || || || ||||| | ||||| | Sbjct 17999 GTATCGCTGTGCTGGGACCCAACGGTGCCGGTAAATCGACGCTGATCAAGATGCTGACGG 17940 Query 280225 GCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACG 280284 | ||| | || |||| || || |||||||| || |||||| | || |||| Sbjct 17939 GTGAGGTCGAGCCCACGTCTGGCCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCCTACG 17880 Query 280285 TCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACA 280344 | ||||||||||| ||||||||||| ||| ||||| ||| |||| | ||||| |||| Sbjct 17879 TGGCTCAGCACGCATTCCACCACATTGAGTCGCACCTCGACGAGACTGCCAACCAGTACA 17820 Query 280345 TTCAGTGGCG 280354 | |||||||| Sbjct 17819 TCCAGTGGCG 17810 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 279355 TGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCC 279414 ||||| |||| || |||||||| || || ||||| | ||||||||| ||| | |||| Sbjct 18806 TGTGTAACTGCGAGTTCTCGCTTGCCTACGGTGGTATGATTCTGCTTAACAACGCTCGCC 18747 Query 279415 TCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCA 279474 | | ||||||||||| |||| || ||||| ||| ||||| || |||||| | Sbjct 18746 TTCGCCTCAAGCGTGGCCACCGTTACGGTCTTTGCGGCCCCAACGGTTGTGGTAAGTCGA 18687 Query 279475 CTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAA 279534 | || ||||||||||| | ||||| ||||| || || || || | | | ||| | | Sbjct 18686 CGCTGATGCGCGCCATCTCCAACGGCCAGCTCGAGGGCTTCCCCAGCCGAGACGAGCTGA 18627 Query 279535 GGACAGTGTATGTAGAGCACGAC 279557 ||| |||| ||| |||||| || Sbjct 18626 AGACTGTGTTTGTCGAGCACAAC 18604 >seq18936 Length=24579 Score = 120 bits (132), Expect = 6e-22 Identities = 264/387 (68%), Gaps = 8/387 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||||| || ||||| | ||||| ||||||| ||||| | Sbjct 21262 TCGAAAAAGTTGGTCTTGCCCTGCATCGAGATCATGTCCATCCAGTCGAACGGGTTCTTC 21203 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| ||||| || || | ||| | | |||||| ||||| ||||| | Sbjct 21202 ACGTTGTAGATCTTGGACACACCCAGCGAGTAC-AGCAGGCGGTCGGCCACGAACTCGAT 21144 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGA 251740 ||||| | ||| || | || |||||||| || | | || || | | || | | Sbjct 21143 GTACTGGCACATGAGCGCCGAATTCATGCCGATGAGCTCCACG-GGCAGCGAGTCGCGCA 21085 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACA 251800 ||| || | ||| | || || || || ||| || | | ||| | | | || Sbjct 21084 CGAACTCGTGCTCGATCGCCACGGCGTCACGCACGATCTCGTGCACGCGGCTCTCCGGCA 21025 Query 251801 GCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTCGTC 251858 |||||||| ||||||| |||||||| || | ||| || | || ||||| ||||| || Sbjct 21024 GCTTGTTCACCAGCTTCGAGTACAGCAGGCACGCGAAGTCCGT--GTGCATGCCCTCATC 20967 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 |||||||||| ||||| || | | |||||||||||| | || || ||| ||||||| Sbjct 20966 ACGACTGATGAGTTCGTTCGAGAAGCTCAGGCCAGGCATGAGACCGCGCTTCTTGAGCCA 20907 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAA 251945 |||||| | ||| || || || ||||| Sbjct 20906 GAAGATAGAGCAGAACGAGCCCGAGAA 20880 >seq17703 Length=31908 Score = 116 bits (128), Expect = 8e-21 Identities = 237/352 (67%), Gaps = 0/352 (0%) Strand=Plus/Plus Query 218654 TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGC 218713 ||||||| ||||| || ||||||| || || || |||| ||||| |||||||| | Sbjct 5853 TTAAGGTTGCTCAATTGGCTGGTTACGTGTCGGAGCACTCTGCGTACCACCACGGTGAAC 5912 Query 218714 AGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGA 218773 ||||| ||||||| || || |||||| || || | || || |||||||| | Sbjct 5913 AGAGTTTGCAGGGCTGTATCGTGAACATGGCGCAAGATTTCGTTGGTAGTAACAATGTTC 5972 Query 218774 ACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTT 218833 | ||||| || | ||||||||||||| | |||||| |||| || |||||| || Sbjct 5973 ATCTGCTGTCGCCTATCGGTCAGTTTGGTACGCGTCTAATGGGCGGCAAGGATGCCGCCA 6032 Query 218834 CTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCG 218893 || | || || || || || ||| || | ||||| | | | | ||| | | Sbjct 6033 GCGCTCGTTACATTTTCACGAACTTGGAGCAGCTCACGCGACTTATTTACGATCCGCTGG 6092 Query 218894 ATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATG 218953 || | | | || |||||||| || || || || || || ||||| || |||||| Sbjct 6093 ATAACGACGTGCTGAAGTATCTGGATGAAGACGGCCAGTCAATCGAGCCGGAATGGTATA 6152 Query 218954 TGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 | || | ||| ||| | | || || ||||| |||||||||| ||||| Sbjct 6153 TCCCGGTTATCCCGATGGTTCTTGTCAATGGCAGTGATGGTATCGGAACAGG 6204 >seq14049 Length=3113 Score = 86.0 bits (94), Expect = 1e-11 Identities = 176/261 (67%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 294183 CCACTGGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACATTGCGTAAAA 294242 ||||| | ||| | ||| |||||||||||||| || || ||||||| ||||| || Sbjct 1365 CCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAA 1306 Query 294243 CAAGTTGCGGGCGCGCAGGCTCTCCTCACCTTGATTACGACGGAGGAGCAGGAAGTCCAT 294302 ||||| ||| || || | ||| | ||| || || ||| || |||||| || | Sbjct 1305 CAAGTCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGAA 1246 Query 294303 GATGTCGGGATGATGGGGTTCCAGATACACAGCAAAGGACCCCTTCC---TGCGTCCCCC 294359 | ||||| ||| || |||| || | || || || ||||| | ||| ||| || Sbjct 1245 CACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTCC 1186 Query 294360 CTGGTTGGCGTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACGATGCCATCGGA 294419 ||||| | ||| || ||| || |||||| | ||||| || | ||| |||| ||| Sbjct 1185 CTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGGA 1126 Query 294420 CTCACCATTGGTTCCGCGAAT 294440 || ||||| ||||| || Sbjct 1125 GGAGCCGTTGGTGCCGCGGAT 1105 >seq14048 Length=3126 Score = 86.0 bits (94), Expect = 1e-11 Identities = 176/261 (67%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 294183 CCACTGGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACATTGCGTAAAA 294242 ||||| | ||| | ||| |||||||||||||| || || ||||||| ||||| || Sbjct 1365 CCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAA 1306 Query 294243 CAAGTTGCGGGCGCGCAGGCTCTCCTCACCTTGATTACGACGGAGGAGCAGGAAGTCCAT 294302 ||||| ||| || || | ||| | ||| || || ||| || |||||| || | Sbjct 1305 CAAGTCGCGCGCACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGAA 1246 Query 294303 GATGTCGGGATGATGGGGTTCCAGATACACAGCAAAGGACCCCTTCC---TGCGTCCCCC 294359 | ||||| ||| || |||| || | || || || ||||| | ||| ||| || Sbjct 1245 CACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTCC 1186 Query 294360 CTGGTTGGCGTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACGATGCCATCGGA 294419 ||||| | ||| || ||| || |||||| | ||||| || | ||| |||| ||| Sbjct 1185 CTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGGA 1126 Query 294420 CTCACCATTGGTTCCGCGAAT 294440 || ||||| ||||| || Sbjct 1125 GGAGCCGTTGGTGCCGCGGAT 1105 >seq13395 Length=1498 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 380 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 439 Query 142565 CCAC 142568 |||| Sbjct 440 CCAC 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027579566817253