Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq17656 127 2e-24 >seq17656 Length=11375 Score = 127 bits (140), Expect = 2e-24 Identities = 452/698 (65%), Gaps = 19/698 (3%) Strand=Plus/Plus Query 20134 CGGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTA 20193 ||| || || ||||| || ||||| |||||| | | || ||||| | || | ||| Sbjct 732 CGGGAATGGCCGTGGGGTTCGCGTGAGCTGCTTCTGAAGAGGCTCAACGTGGTTCAGGTA 791 Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGC 20253 | || || || || | | ||| || || || || ||| | || || | || || || Sbjct 792 AACATGCGCGTCACCAATCACGTGGATGAATTCACCTGGTTTCAGCCCGGCCACTTGTGC 851 Query 20254 AAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTC 20313 | | || | || | ||||| |||||||| || || || || | |||||||| Sbjct 852 CACTAGCCGCGTGAGCAGCGCGTAGCTTGCAATGTTGAACGGCACGCCGAGTCCCATGTC 911 Query 20314 TCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAA 20373 | || | ||| |||| ||| ||||| ||||| ||||| || || || || || || || Sbjct 912 GGCTGAGCGCTGGTACATCTGGCAGGAGAGCTCTCCGTCCGCCACGTAGAACTGGCAGAA 971 Query 20374 CAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAAT 20433 || |||||| || || ||||||||| || || || |||||||||||| ||| || Sbjct 972 CATGTGACACGGTGGCAGCGCCATCTCGTTCAGATCGGCGGGGTTCCACGCAGACAAAAC 1031 Query 20434 GATTCTTCTATCGTGCGGATTATT----TTTTATTAAATCCACAATGTACGACAATTGGT 20489 || | | ||| ||| || | | | |||| | | | | ||||| Sbjct 1032 AATCCGGCGGTCGGTCGGGTTGGTCCGCAGCTTGTGAATC----ACCTCAGCAAGTTGGT 1087 Query 20490 CAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCC 20549 | | ||||| || || ||||| |||| | |||| ||| || |||||||| | || Sbjct 1088 CCACACCCTGTCCAGTGTAGTCCGCATGCATGTCCGTATACTTGGCTCCAAAGTGGCGCC 1147 Query 20550 ACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCG---CCAGGCCGCGCC 20606 ||||||| ||||| || ||||| | || || | |||| ||| ||| || || | Sbjct 1148 ACTGGAAGCCGTAGACCGGTCCAAGGTCGCC--CACTTC-CCGCGATTCCAACCCTCGAC 1204 Query 20607 CGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGA-CTCCTGTTCTTGAAAGC 20665 | ||| |||| | || |||||| |||||| || | || |||| | || | Sbjct 1205 TGTCCAAATACTCTCGAGATCCATTTCCGTCCCAGATGTGGATATCCTTCTGCTGCAGCG 1264 Query 20666 TCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAA 20725 | | | || || || | | ||||| |||||||| | | || || ||||| Sbjct 1265 TGTGCGCATTC-GTGTCGCCACTAACGAACCACAGCAGCTCCTCGGCCACACCGCGCCAG 1323 Query 20726 AACACCCGCTTTGTGGTTAGTA-AGGGA--AAGTGGTCCCGCAGACTATACCTGGCCTGC 20782 || || ||||| || || || | |||| | || ||||| ||||| |||| |||| Sbjct 1324 AAGACGCGCTTGGTCGTGAGCAGCGGGAACACGTTGTCCCTGAGACTGAACCTCATCTGC 1383 Query 20783 ATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 ||||| || || | ||||||| | || |||||||| Sbjct 1384 GCTCCAAAGAGCGACAAGGTGCCTGTCCCCGTGCGGTC 1421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441265033313720