Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq19195 132 1e-25 seq18510 131 4e-25 seq17350 120 7e-22 seq16035 91.5 3e-13 >seq19195 Length=70740 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || |||||| |||||||| ||||| || | || || || |||||| Sbjct 21615 TCCTTTTGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 21674 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||| || | ||||| || || || || ||||||||| |||||||| Sbjct 21675 ATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG 21734 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || || ||||||||||||||||| || |||| ||||| ||| Sbjct 21735 TCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACG 21794 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 21795 AAGATCTGCAT 21805 Score = 111 bits (122), Expect = 4e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 ||||| || |||||| |||||||| ||||| || | || || || |||||||||| | Sbjct 22077 TGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAA 22136 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 ||||| || | ||||| || || || || ||||||||| ||||| || || || Sbjct 22137 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATC 22196 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || || || || || ||||||||||||||||| || |||| ||||| ||||| Sbjct 22197 GAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAA 22252 >seq18510 Length=33167 Score = 131 bits (144), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | ||| || || ||||| || |||| Sbjct 31719 CATG-CCACCACGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGT 31661 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||||||||| || | Sbjct 31660 CGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 31601 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| || ||||| || ||| ||||| || || ||||| || | | Sbjct 31600 GCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCT 31541 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||||||||| || ||||| ||||||||||| |||||||| Sbjct 31540 CCACGTCGAGGGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31489 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || |||||| Sbjct 31943 CCACCACGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTC 31884 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || ||||||||||||||||| || | || Sbjct 31883 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 31824 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || ||| ||||| || || ||||| || | || || Sbjct 31823 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACG 31764 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 31763 TCGAGGGTGATTGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31717 >seq17350 Length=35721 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 6405 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6464 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | ||||| || || || |||||||||||| || ||||| || Sbjct 6465 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 6524 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || || || || |||||||| ||||| || ||||| ||||| || || Sbjct 6525 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 6584 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 6585 ATCTGCATGAT 6595 >seq16035 Length=25973 Score = 91.5 bits (100), Expect = 3e-13 Identities = 188/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 ||||| || | || ||| |||||| || || ||||| | | ||| |||||||| Sbjct 14145 ATATAACGAGGGCTAGCGGCATCCTTGCCTCCTTGCAACCGGGTACCAAACTGGCCGGAA 14204 Query 325382 GGCAACAACCAGTTGATG-TTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGT 325440 || ||||| || || | || ||| ||| || |||| || || | ||| || || || Sbjct 14205 GGATACAAC-AGAGGAAGGTTGTTGGATCCCACGAAATCTTGCGCCATGTTTACAATCGT 14263 Query 325441 CCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAACCGCTG 325498 | ||||| || ||||||||||||||||| || |||||| ||||| ||| || | Sbjct 14264 CGAGTGCAGCGAAGCTTCGCCATGGTGATACGCCGTATGCTCACTGCA--GTAGCCTGCG 14321 Query 325499 AACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTC 325558 | ||||| ||||| || ||| | || | |||||||| || || | | || || Sbjct 14322 AGTTGTGCTACCTTGACTTCGCTAGTTAGCTTGCGCTTCAAGCATGCGAAAAGGACCTTG 14381 Query 325559 CGTTGAGAAGGTTTGAAACCATCAACGACCGACGG 325593 || || ||| || | ||||||||| || || || Sbjct 14382 CGCTGCGAAATCTTCAGACCATCAACCACTGAGGG 14416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179359171948374