Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq18578 107 4e-18 seq18936 105 1e-17 seq16035 93.3 9e-14 >seq18578 Length=55264 Score = 107 bits (118), Expect = 4e-18 Identities = 188/273 (69%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 || || ||||||| || || || |||||||| |||| ||||| || | ||||| Sbjct 18193 CTGCTCCACGAACCTTGAGAGGTTGCCCTTGTAGATCTTTAGCTTACGGGTC---TCGTA 18249 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 || || || |||||||| | ||||||||| ||||||||||| ||||| || | || Sbjct 18250 GTGAATGATGTTCGTGCAAACCGTGTCGAGGAAGCCGGAGTCGTGCGACACCATGATGCT 18309 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAG 333901 || |||| | ||| | ||||||| | |||||| || || ||| | Sbjct 18310 CGTCACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACATTCTTGACATCCAA 18369 Query 333902 ATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 333961 ||||| || || ||||||||||| || | | || ||| | ||||| ||||| || || Sbjct 18370 GTGGTTCGTGGGTTCGTCAAGAAGCAGAATGTCGGCCTTCTGCAGCATAGCACGAGCCAG 18429 Query 333962 AGCGAGTTTCATTTTCCACCCTCCTGAAAGAGT 333994 | | |||||| ||||| || || ||||| || Sbjct 18430 CTCCAATTTCATCTTCCAACCACCCGAAAGGGT 18462 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||| || Sbjct 17785 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCGAG 17844 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| ||||||||||| || ||||| |||||||| || | |||||| || || Sbjct 17845 GTGCGACTCAATGTGGTGGAATGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 17904 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || || |||| || | | ||||| |||| ||| || || || Sbjct 17905 CTTCCACACCTGGCCAGACGTGGGCTCGACCTCACCCGTCAGCATCTTGATCAGCGTCGA 17964 Query 333494 TTTTCCCGCACCATT 333508 ||| || ||||| || Sbjct 17965 TTTACCGGCACCGTT 17979 Score = 84.2 bits (92), Expect = 5e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || ||||| ||||| || ||||||||||| || || ||||| || Sbjct 18643 GGGGAAGCCCTCGAGCTGGCCGTTGGAGATGGCGCGCATCAGCGTCGACTTACCACAACC 18702 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || || |||||||| |||| |||||||| || | || | ||||| || Sbjct 18703 GTTGGGGCCGCAAAGACCGTAACGGTGGCCACGCTTGAGGCGAAGGCGAGCGTTGTTAAG 18762 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACA 334344 ||||| | ||||| || || || || || || || | ||||| Sbjct 18763 CAGAATCATACCACCGTAGGCAAGCGAGAACTCGCAGTTACACA 18806 >seq18936 Length=24579 Score = 105 bits (116), Expect = 1e-17 Identities = 258/383 (67%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| | ||||| ||||| ||| ||| | ||||||||||| | | || ||| Sbjct 20892 TTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTGAGCTTCTCGAAC 20951 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 || |||||||||| || |||||| | ||| | |||| ||| || |||| || || Sbjct 20952 GAACTCATCAGTCGTGATGAGGGCATGCACACGGACTTCGCGTGC-CTGCTGTACTCGAA 21010 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 ||| ||||||||| || || || || | | ||| | || || || | | Sbjct 21011 GCTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCGTGACGCCGTGGCGA 21069 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583 ||| | || ||| | ||||| | | || ||| || |||||||| || | | Sbjct 21070 TCGAGCACGAGTTCGTGCGCGACTCGCTGCCCGTGGAGCTCATCGGCATGAATTCGGCGC 21129 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 ||||| | ||||||||||| ||||| ||||||||| | | | ||| ||| | || Sbjct 21130 TCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCGC-TGGGTGTGTCC 21188 Query 243644 AAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 ||| | |||||| |||||||| || | || ||||| | || ||| | || || || Sbjct 21189 AAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATCTCGATGCAGGGCAAG 21248 Query 243703 ACTAACTTCTTCGAAAAGCGTGT 243725 || ||||| ||||| |||||||| Sbjct 21249 ACCAACTTTTTCGAGAAGCGTGT 21271 >seq16035 Length=25973 Score = 93.3 bits (102), Expect = 9e-14 Identities = 192/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 || || ||||| || | || ||| |||||| || || ||||| | | ||| |||||| Sbjct 14139 GTAAAGATATAACGAGGGCTAGCGGCATCCTTGCCTCCTTGCAACCGGGTACCAAACTGG 14198 Query 297497 CCCTCCGGCAACAACCAGTTGATG-TTATTGCTTCCGACATAATCCTGTGCAAGGTTCAC 297555 || || ||||| || || | || ||| ||| || |||| || || | ||| || Sbjct 14199 CCGGAAGGATACAAC-AGAGGAAGGTTGTTGGATCCCACGAAATCTTGCGCCATGTTTAC 14257 Query 297556 GATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAA 297613 || ||| ||||| || ||||||||||||||||| || |||||| ||||| ||| Sbjct 14258 AATCGTCGAGTGCAGCGAAGCTTCGCCATGGTGATACGCCGTATGCTCACTGCA--GTAG 14315 Query 297614 CCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATC 297673 || || ||||| ||||| || ||| | || | |||||||| || || | | Sbjct 14316 CCTGCGAGTTGTGCTACCTTGACTTCGCTAGTTAGCTTGCGCTTCAAGCATGCGAAAAGG 14375 Query 297674 ACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGG 297714 || || || || ||| || | ||||||||| || || || Sbjct 14376 ACCTTGCGCTGCGAAATCTTCAGACCATCAACCACTGAGGG 14416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102603986013550