Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq14049 185 1e-41 seq14048 185 1e-41 seq18936 154 2e-32 >seq14049 Length=3113 Score = 185 bits (204), Expect = 1e-41 Identities = 942/1480 (64%), Gaps = 40/1480 (3%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 || || |||| |||| | ||||||| | |||| ||||| || | || ||||| || || Sbjct 2195 TACATGTTGGACGTGAACGGCTCAATGGACTCGTTGTTGCCGAGAATCTGGGCCGTCGAA 2136 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTT 114059 || |||||||| || |||| ||| || ||| || || || | || | || | | Sbjct 2135 GCAGTGGGCATAGGAGCCACGAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACATTC--T 2078 Query 114060 CCTTGAGGGCGTCCCAGTCGTAGTTG-----AG-CTTTGTCTCCCCCTGCCACATATCAA 114113 ||||||| || ||||||| | | || | ||| | ||| ||||| || | Sbjct 2077 CCTTGAGTGCAGCCCAGTCCCAAAGGCCAGAAGACGGAGTCACGCCC---CACATGTCGA 2021 Query 114114 ACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCT 114173 |||||| ||| || | | || ||||| |||| || |||||||| |||||| ||| Sbjct 2020 ACTGGAAGATGCCCTTGCTTGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCTCCT 1961 Query 114174 CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCAT 114233 || | ||| || ||| | | |||| || || ||||| |||||| | Sbjct 1960 TGGCGATTTCCATTGACGTCTCCATCGAAGCGTAGTAGATCGTCTCGAAAATGTTCTTGT 1901 Query 114234 TCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGC 114291 | | | | ||||| ||| ||||| ||| ||| || | ||||| | || || Sbjct 1900 TAAGTTCACGGGCCTGCTCGCTCTCAAATGCGTAGTT--CATGAGGATAAAGGCGTCAGC 1843 Query 114292 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC 114351 ||||| ||||| || | ||||| || || || | ||| || ||||| || || | | Sbjct 1842 AAGACCCTGGACGCCAATGCCAACCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCGC 1783 Query 114352 CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGAT 114411 || || || | || || || ||| | || || || ||||| ||||| || | Sbjct 1782 GACCGGGTAGTAGTTGACGTCAATGACCTTGTTCAGGTTACGAGTGACCACCTTGGTCAC 1723 Query 114412 TTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGC 114471 || | || || | ||| | || || | ||| | || |||| || ||||| Sbjct 1722 CTCGTACAGTTTCTGGTAGTTGAACACGCCATCCTCCAC---GA---ACTTGGGCAGGGC 1669 Query 114472 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA-GTGTACTCTATAATTTCCG 114530 | || ||||| || ||||| | ||| || | | | |||||||| || | || Sbjct 1668 CACAGAGGCCAGGTTGCACACCGCCACCTCGTC-TGGTGACGTGTACTCCATCACCTCAC 1610 Query 114531 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 114590 ||||| || | || ||||| | ||||| || || ||||| ||| || Sbjct 1609 AGCACAAGTTGCTAGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCG 1550 Query 114591 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 114650 | |||||||| |||||| | ||| |||||||| | || | | || || || || Sbjct 1549 CGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACC 1490 Query 114651 AGACATCGGC--GGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 | || | || ||| | || | ||| || ||||||| ||||||||| ||| Sbjct 1489 A--CAGCTGCTGGGCGTTGATCGTCTTGCGGGCACGTCCCTCCTTCTCGTACTTCTCGTA 1432 Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768 || | ||| ||||| |||||| | || |||| | || || | | || ||||| Sbjct 1431 CAGCGTTTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAA 1372 Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 | | ||| | ||| |||| || ||||||||||| ||||| || | ||| || || Sbjct 1371 CAAACTCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGC 1312 Query 114829 TGAGAAGAGATCCCG-ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 114887 |||| | || || || | || | || | || || || ||||| |||| | Sbjct 1311 GTAGAACAAGTCGCGCGCACGGTGCAGC-TCGTTACCGTGGTTCTTACGCAGATCCAGGA 1253 Query 114888 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 114944 | || | | || || |||||||| |||| ||| | |||| || ||||| || | Sbjct 1252 ACTCGAACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGC 1193 Query 114945 GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004 || |||||| ||||| | || ||| | ||||| || | ||||| || ||||| | Sbjct 1192 CTCCTCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCC 1133 Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGT 115064 ||| || ||| || || || || || || |||| | | || || || Sbjct 1132 CATTGGAGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATAC 1073 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 || |||||||| || |||||||| ||||| |||||||| | |||| || |||||| Sbjct 1072 TGATGCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGA 1013 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTG 115184 | || || || ||||| ||| | || | | |||||| ||||| || || | | Sbjct 1012 TGCCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCG 953 Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTA 115243 | || || || || || || || || |||||||| |||| | || | || ||||| Sbjct 952 GCGTTCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGC 894 Query 115244 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 115303 ||||| |||| || | || | ||||| | ||| || || | || || ||||| Sbjct 893 TCGTACGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATG 834 Query 115304 AACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTG--GAGGTAACTCTTCT 115361 | ||| | ||||| |||| | | || | | ||||| |||||| | | ||| Sbjct 833 ATCATCTGCTGGGGGCGCTCCACGACTTTGCCGTTCA--CTCTGAAGAGGTAGCCCCTCT 776 Query 115362 CCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTCCCT 115401 |||| ||||||| ||||| || | | ||| ||||||| Sbjct 775 CCAACGTCTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCT 736 >seq14048 Length=3126 Score = 185 bits (204), Expect = 1e-41 Identities = 942/1480 (64%), Gaps = 40/1480 (3%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 || || |||| |||| | ||||||| | |||| ||||| || | || ||||| || || Sbjct 2195 TACATGTTGGACGTGAACGGCTCAATGGACTCGTTGTTGCCGAGAATCTGGGCCGTCGAA 2136 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTT 114059 || |||||||| || |||| ||| || ||| || || || | || | || | | Sbjct 2135 GCAGTGGGCATAGGAGCCACGAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACATTC--T 2078 Query 114060 CCTTGAGGGCGTCCCAGTCGTAGTTG-----AG-CTTTGTCTCCCCCTGCCACATATCAA 114113 ||||||| || ||||||| | | || | ||| | ||| ||||| || | Sbjct 2077 CCTTGAGTGCAGCCCAGTCCCAAAGGCCAGAAGACGGAGTCACGCCC---CACATGTCGA 2021 Query 114114 ACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCT 114173 |||||| ||| || | | || ||||| |||| || |||||||| |||||| ||| Sbjct 2020 ACTGGAAGATGCCCTTGCTTGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCTCCT 1961 Query 114174 CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCAT 114233 || | ||| || ||| | | |||| || || ||||| |||||| | Sbjct 1960 TGGCGATTTCCATTGACGTCTCCATCGAAGCGTAGTAGATCGTCTCGAAAATGTTCTTGT 1901 Query 114234 TCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGC 114291 | | | | ||||| ||| ||||| ||| ||| || | ||||| | || || Sbjct 1900 TAAGTTCACGGGCCTGCTCGCTCTCAAATGCGTAGTT--CATGAGGATAAAGGCGTCAGC 1843 Query 114292 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC 114351 ||||| ||||| || | ||||| || || || | ||| || ||||| || || | | Sbjct 1842 AAGACCCTGGACGCCAATGCCAACCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCGC 1783 Query 114352 CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGAT 114411 || || || | || || || ||| | || || || ||||| ||||| || | Sbjct 1782 GACCGGGTAGTAGTTGACGTCAATGACCTTGTTCAGGTTACGAGTGACCACCTTGGTCAC 1723 Query 114412 TTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGC 114471 || | || || | ||| | || || | ||| | || |||| || ||||| Sbjct 1722 CTCGTACAGTTTCTGGTAGTTGAACACGCCATCCTCCAC---GA---ACTTGGGCAGGGC 1669 Query 114472 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA-GTGTACTCTATAATTTCCG 114530 | || ||||| || ||||| | ||| || | | | |||||||| || | || Sbjct 1668 CACAGAGGCCAGGTTGCACACCGCCACCTCGTC-TGGTGACGTGTACTCCATCACCTCAC 1610 Query 114531 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 114590 ||||| || | || ||||| | ||||| || || ||||| ||| || Sbjct 1609 AGCACAAGTTGCTAGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCG 1550 Query 114591 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 114650 | |||||||| |||||| | ||| |||||||| | || | | || || || || Sbjct 1549 CGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACC 1490 Query 114651 AGACATCGGC--GGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 | || | || ||| | || | ||| || ||||||| ||||||||| ||| Sbjct 1489 A--CAGCTGCTGGGCGTTGATCGTCTTGCGGGCACGTCCCTCCTTCTCGTACTTCTCGTA 1432 Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768 || | ||| ||||| |||||| | || |||| | || || | | || ||||| Sbjct 1431 CAGCGTTTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAA 1372 Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 | | ||| | ||| |||| || ||||||||||| ||||| || | ||| || || Sbjct 1371 CAAACTCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGC 1312 Query 114829 TGAGAAGAGATCCCG-ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 114887 |||| | || || || | || | || | || || || ||||| |||| | Sbjct 1311 GTAGAACAAGTCGCGCGCACGGTGCAGC-TCGTTACCGTGGTTCTTACGCAGATCCAGGA 1253 Query 114888 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 114944 | || | | || || |||||||| |||| ||| | |||| || ||||| || | Sbjct 1252 ACTCGAACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGC 1193 Query 114945 GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004 || |||||| ||||| | || ||| | ||||| || | ||||| || ||||| | Sbjct 1192 CTCCTCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCC 1133 Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGT 115064 ||| || ||| || || || || || || |||| | | || || || Sbjct 1132 CATTGGAGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATAC 1073 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 || |||||||| || |||||||| ||||| |||||||| | |||| || |||||| Sbjct 1072 TGATGCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGA 1013 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTG 115184 | || || || ||||| ||| | || | | |||||| ||||| || || | | Sbjct 1012 TGCCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCG 953 Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTA 115243 | || || || || || || || || |||||||| |||| | || | || ||||| Sbjct 952 GCGTTCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGC 894 Query 115244 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 115303 ||||| |||| || | || | ||||| | ||| || || | || || ||||| Sbjct 893 TCGTACGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATG 834 Query 115304 AACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTG--GAGGTAACTCTTCT 115361 | ||| | ||||| |||| | | || | | ||||| |||||| | | ||| Sbjct 833 ATCATCTGCTGGGGGCGCTCCACGACTTTGCCGTTCA--CTCTGAAGAGGTAGCCCCTCT 776 Query 115362 CCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTCCCT 115401 |||| ||||||| ||||| || | | ||| ||||||| Sbjct 775 CCAACGTCTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCT 736 >seq18936 Length=24579 Score = 154 bits (170), Expect = 2e-32 Identities = 398/592 (67%), Gaps = 17/592 (3%) Strand=Plus/Minus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || || ||||||||||| ||||| ||||| || | || | Sbjct 21292 CCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGCATCGAG 21233 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 125866 || | ||||| | || || |||||||| ||| | || | | ||| || | | Sbjct 21232 ATCATGTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACCCAGCGAG 21173 Query 125867 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 125926 | || || || || | ||| |||| ||||||| |||| | | || ||||| ||| Sbjct 21172 TACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAATTCATGCCG 21113 Query 125927 ATGAGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCG 125985 ||||| | || ||| |||| ||| | |||| | | ||| || ||||||| || || Sbjct 21112 ATGAGCTC-CACGGGCAGCGAGTCGCGCACGAACTCGTGCTCGATCGCCACGGCGTCACG 21054 Query 125986 CACGATGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-C 126043 |||||| |||| | | | | || ||| | | || || || | | || | Sbjct 21053 CACGATCTCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAGCTTCGAGTACAGCAGGC 20995 Query 126044 ACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGT 126103 ||| | || || ||| | ||||| ||||| ||||||||| |||||||||| ||| Sbjct 20994 ACG-CGAAGTCCGTGTGCATGCCCTCATCACGACTGATGAGTTCGTTCGAGAAGCTCAGG 20936 Query 126104 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAG 126163 || ||||||||||| |||||||| | |||||| || | || || || ||||||||||| Sbjct 20935 CCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAA 20876 Query 126164 ATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGTC 126222 || ||||| || |||||||| | |||||||||| | || || || | ||| Sbjct 20875 ATGCCCTCTACCGCGGCGAACGCCAGCAGACGCTCAGGGTACGA-CGACACACGAGGGTC 20817 Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTC----TGGATCG 126278 ||||| | ||||| | ||||| ||||| | ||||||| ||| ||| ||| Sbjct 20816 GCACCACCGAAGAGCCCAGCGAGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCTCG 20757 Query 126279 CTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 | |||| | |||||| || || ||| ||||||||| | || || || Sbjct 20756 CAGCAAATA-ATCCTTC---TCCACTGCATCCTTGATGTACGTGTCGATCAG 20709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597207748651640