Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq17350 131 2e-25 seq19195 114 1e-20 seq18510 111 2e-19 >seq17350 Length=35721 Score = 131 bits (144), Expect = 2e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 6403 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6462 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | || |||||||||| |||||| || |||| ||| | Sbjct 6463 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CGTTG 6521 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | ||||| || ||||| || | ||||||||| |||||||| || ||||| ||| Sbjct 6522 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 6581 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 6582 AAGATCTGCAT 6592 >seq19195 Length=70740 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||| | |||| || ||||||||| || ||||| || || || || | Sbjct 21590 ACGCAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCGCTTAGCGTGCGGCC 21649 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || | ||||||||||| | || | || |||||| Sbjct 21650 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTT 21709 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| |||||| || || | ||| | | | || ||| || ||||| |||| ||||| Sbjct 21710 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 21768 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| | |||||| || ||||| ||||| Sbjct 21769 TCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 21805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 42024 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 42083 || || ||||| || || || || |||| || |||||||| || ||||| || | Sbjct 22077 TGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAA 22136 Query 42084 CGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 42143 ||||||||||| | || | || ||||||||| |||||| || || | | | | | Sbjct 22137 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATC 22196 Query 42144 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGA 42201 | ||| || ||||| |||| |||||| || |||||||| | |||||| || |||| Sbjct 22197 GAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGA 22254 >seq18510 Length=33167 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| ||||| || |||||| || || ||||| || ||| || || | Sbjct 31704 ACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 31645 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 31644 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTT 31585 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| || || || || | | | | | ||| | ||||| |||| ||||| Sbjct 31584 GTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTGAT 31525 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || |||||||| |||||||| || ||||| ||||| || Sbjct 31524 CGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTT 31486 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| ||||| || |||||| || || ||||| || ||| || || | Sbjct 31932 ACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 31873 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 31872 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTT 31813 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| || || || || | | | | | ||| | ||||| |||| ||||| Sbjct 31812 GTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTGAT 31753 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| |||||||| || ||||| ||||| Sbjct 31752 TGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543080167804720