Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq8348 84.2 2e-11 seq16615 82.4 6e-11 >seq8348 Length=24054 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 ||||| |||| ||| || | ||| | ||| | ||||||||||| ||| | | Sbjct 4779 ACGGCGGGCGCCCACCGCCTCTGGTCGCACCGCGGCTACAAGGCCAAACTGCCGCTGCGC 4838 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGC--AGGACAGAACACCATCCCGCAGTGGGTGC 108472 || ||||| ||| ||| |||| |||| || || |||||| ||||| || Sbjct 4839 GTCTTCCTCATGCTCTGCAACTCGATGGCCTTCGAAGGA--ACCATCTTCGAGTGGTCGC 4896 Query 108473 TCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACA 108532 ||| ||| | || ||||||||| ||| |||||||| |||||||| |||||| | | Sbjct 4897 GCGACCACCGCGTGCACCACAAGGGCTCGGACACGACCGCCGACCCGCACAACTCGGAGC 4956 Query 108533 GGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGAC 108579 | || ||| ||||| ||| |||| ||| ||||| || |||| || Sbjct 4957 GCGGCCTCTTTTTCTCCCACATGGGCTGGGTCATGGTGCGCAAGCAC 5003 >seq16615 Length=20503 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/152 (72%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| ||||||| || Sbjct 5154 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGAGTGC 5213 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 ||||| |||||| | | | || |||| ||| ||||| |||| |||||| || | | Sbjct 5214 TGACCCGCACAACTCTGGCCGCGGTTTCTTCTTCGCGCACATGGGCTGGCTCCTGGTCAA 5273 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGGTCGAA 108604 || |||||| | ||| || ||| || |||| Sbjct 5274 GAAAGACCCCAAGGTGGTCAAGGCTGG-CGAA 5304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381681915763752