Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq19195 138 1e-27 seq14049 136 4e-27 seq14048 136 4e-27 seq17350 105 6e-18 seq18936 96.9 3e-15 >seq19195 Length=70740 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| ||| | || | ||||||||| ||||| || ||||| |||| Sbjct 21578 TCCGCCACGCAGACGCAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCGCT 21637 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| || || ||||| || || ||| ||||||| |||||||| || || || Sbjct 21638 TAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGG 21697 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 |||||||||||||| |||||||||||| | |||| |||| | ||||| ||| | Sbjct 21698 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCA 21756 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | |||| || | ||| ||||| |||| || || || || ||||||||| Sbjct 21757 CGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 21806 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||||||||| || || || ||||| |||| Sbjct 21807 CCGCCGCGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTT 21866 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| ||||||| |||||||| || || || Sbjct 21867 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGG 21926 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 |||||||||||||| |||||||||||| Sbjct 21927 ATGCCCTCCTTGTCTTGGATTTTCTGCTT 21955 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 || || ||||| |||| | |||||| || || ||||| || || ||| ||||||| Sbjct 22077 TGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAA 22136 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 |||||||| || || || |||||||||||||| |||||||||||| | | |||| Sbjct 22137 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATC 22196 Query 127049 GTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | ||||| ||| || |||| || | ||| ||||| |||| || || || || Sbjct 22197 GAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAA 22252 >seq14049 Length=3113 Score = 136 bits (150), Expect = 4e-27 Identities = 342/511 (67%), Gaps = 13/511 (3%) Strand=Plus/Minus Query 145701 CGAGGCCGCCGCTTCGGCGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCG 145760 ||||||| | |||| ||| ||||||||||| | || | ||| ||| | ||| Sbjct 2593 CGAGGCC-CTGCTT----GTCCACGGTGAACTGAATGGCGTCAGCTTTCGGGCGTCCGCG 2539 Query 145761 CAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA- 145819 || ||||||||||| ||||||||| |||| ||| | ||| ||||| ||| || || Sbjct 2538 CATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAG 2479 Query 145820 -TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAA 145878 | | || ||| || ||||| | | || || || |||||||| |||| | Sbjct 2478 CTTGCTGAT--CGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTA- 2422 Query 145879 GGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTT 145937 || ||| ||||| || | || || | ||| ||| || || ||||| | || || Sbjct 2421 GGCGCCGCGGTCCGCCGACAAATCCAGAATGGCCTTCTGCTTGATCTCCCACACCGTCTT 2362 Query 145938 AAAGAGATCCTTGACGTGCTGGGGTATTT-CGTCAATGTTCTGCACAGACCCATTTTCGG 145996 | ||||||||| | || || | ||| |||||||| || ||| || | Sbjct 2361 GTACTTGTCCTTGACGCTGTCCGGGATCGACCTCACC-TTCTGCACGGAGCCACCGTCAG 2303 Query 145997 CCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGA 146056 ||| || | ||| |||| || || || | ||| ||| || | ||| | || || | Sbjct 2302 CCAGGATCTGGTTACGCACCTCGGGCGTCCAGATGCCCAAATCGATGAGTTCATTCATCA 2243 Query 146057 GATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGG 146116 | |||| ||| || | | ||||||||||| || || || | |||| |||| | Sbjct 2242 GGTACTTGTTCACGATCGTGAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACG 2183 Query 146117 TGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGT 146176 |||||||||| | ||||||||||| ||||| ||||| ||||||| ||| || ||||| Sbjct 2182 TGAACGGCTCAATGGACTCGTTGTTGCCGAGAATCTGGGCCGTCGAAGCAGTGGGCATAG 2123 Query 146177 ACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||| |||| ||||| | || |||||| Sbjct 2122 GAGCCACGAGCAGCGAGTTGCGCAGGCCGTG 2092 >seq14048 Length=3126 Score = 136 bits (150), Expect = 4e-27 Identities = 342/511 (67%), Gaps = 13/511 (3%) Strand=Plus/Minus Query 145701 CGAGGCCGCCGCTTCGGCGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCG 145760 ||||||| | |||| ||| ||||||||||| | || | ||| ||| | ||| Sbjct 2593 CGAGGCC-CTGCTT----GTCCACGGTGAACTGAATGGCGTCAGCTTTCGGGCGTCCGCG 2539 Query 145761 CAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA- 145819 || ||||||||||| ||||||||| |||| ||| | ||| ||||| ||| || || Sbjct 2538 CATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAG 2479 Query 145820 -TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAA 145878 | | || ||| || ||||| | | || || || |||||||| |||| | Sbjct 2478 CTTGCTGAT--CGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTA- 2422 Query 145879 GGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTT 145937 || ||| ||||| || | || || | ||| ||| || || ||||| | || || Sbjct 2421 GGCGCCGCGGTCCGCCGACAAATCCAGAATGGCCTTCTGCTTGATCTCCCACACCGTCTT 2362 Query 145938 AAAGAGATCCTTGACGTGCTGGGGTATTT-CGTCAATGTTCTGCACAGACCCATTTTCGG 145996 | ||||||||| | || || | ||| |||||||| || ||| || | Sbjct 2361 GTACTTGTCCTTGACGCTGTCCGGGATCGACCTCACC-TTCTGCACGGAGCCACCGTCAG 2303 Query 145997 CCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGA 146056 ||| || | ||| |||| || || || | ||| ||| || | ||| | || || | Sbjct 2302 CCAGGATCTGGTTACGCACCTCGGGCGTCCAGATGCCCAAATCGATGAGTTCATTCATCA 2243 Query 146057 GATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGG 146116 | |||| ||| || | | ||||||||||| || || || | |||| |||| | Sbjct 2242 GGTACTTGTTCACGATCGTGAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACG 2183 Query 146117 TGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGT 146176 |||||||||| | ||||||||||| ||||| ||||| ||||||| ||| || ||||| Sbjct 2182 TGAACGGCTCAATGGACTCGTTGTTGCCGAGAATCTGGGCCGTCGAAGCAGTGGGCATAG 2123 Query 146177 ACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||| |||| ||||| | || |||||| Sbjct 2122 GAGCCACGAGCAGCGAGTTGCGCAGGCCGTG 2092 >seq17350 Length=35721 Score = 105 bits (116), Expect = 6e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 6405 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6464 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 | |||||||| || || || ||||||||||||||| |||||||||||||| |||| || Sbjct 6465 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACGTTG-TC 6523 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 6524 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 6583 Query 127105 AATCTGCATG 127114 ||||||||| Sbjct 6584 GATCTGCATG 6593 >seq18936 Length=24579 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || ||||| ||| | | ||| | |||||||||| || || |||||||||||||| || Sbjct 21114 GGCATGAATTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT-GTA 21172 Query 47472 CA-GCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | ||| || ||| ||||| ||| || |||| || ||||| | ||| ||| | Sbjct 21173 CTCGCTGGGTGTGTCC-AAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGA 21231 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||| | |||||||||||||||||||||||||||| || ||||| || Sbjct 21232 TCTCGATGCAGGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 21280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475384700535920