Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq19195 105 6e-18 seq18510 96.9 3e-15 seq14049 82.4 7e-11 seq14048 82.4 7e-11 >seq19195 Length=70740 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| || || || | || |||||| |||||||| || ||||||||||| || || |||| Sbjct 21577 TTCCGCCACGCAGACGCAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCGC 21636 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | || || |||| || || || ||| | ||||| || |||||||| || | Sbjct 21637 TTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGG 21696 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 | ||||| || || ||||| ||||| || || | || | || | | ||| || | ||| Sbjct 21697 GGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCC 21755 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||| ||||| || | || || || || || ||||| Sbjct 21756 ACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 21805 >seq18510 Length=33167 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| || |||| ||| || ||||| ||||| || || ||| Sbjct 31718 ATGCCACCACGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCG 31659 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || || |||| || || || ||| | |||| || |||||||| ||| Sbjct 31658 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGC 31599 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || ||||| || || || | || | | ||| || | ||| Sbjct 31598 GGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCC 31539 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | ||| ||||| || || || || || || || |||||| Sbjct 31538 ACGTCGAGGGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATC 31488 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || ||| || |||| ||| || ||||| ||||| || || ||||| Sbjct 31943 CCACCACGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTC 31884 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| || || || ||| | |||| || |||||||| |||||| Sbjct 31883 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 31824 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || ||||| || || || | || | | ||| || | ||| || Sbjct 31823 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACG 31764 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || || || || || || || ||||| Sbjct 31763 TCGAGGGTGATTGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31717 >seq14049 Length=3113 Score = 82.4 bits (90), Expect = 7e-11 Identities = 284/436 (65%), Gaps = 13/436 (3%) Strand=Plus/Plus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACG-GACGCGACATCGAAAACGCGAC 122974 || || ||| |||||||||| || | ||| | ||| |||| |||||| || ||| Sbjct 823 CAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGACG-GACATCCAAGCGGCGCT 881 Query 122975 CGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGC 123034 | || ||||| | ||||| || || || ||||||||||||| ||||| |||| Sbjct 882 GCAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCGACGCCCACGCTGTTTAA 941 Query 123035 CGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAG 123094 || || ||| | || ||| |||| ||||| || ||||| || ||| || ||| Sbjct 942 TGCAGGAACGCCGCGCCCGCAGCTGTCGTCGTGCTTCTTGCTGGCCATGCAGGACGACTC 1001 Query 123095 CATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGG 123154 ||| || ||||| || || | | ||||||| || ||||| | | || || Sbjct 1002 CATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCTGGAGG 1061 Query 123155 CATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGA-AGCCGCATCAGAAGCACCGACG 123213 || ||| | | ||||| | | | ||| || | ||| |||| | ||||| ||| Sbjct 1062 TATTGGCATCAGTATGCACAATATTCG-TGCCACGAACAGCTACATCCGCGGCACCAACG 1120 Query 123214 GAATCGCCTCC---GGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACG 123270 | | ||||| ||| || ||||||| |||| | || || | | || | | Sbjct 1121 G---CTCCTCCAATGGGATCATCCCCATGCTCAGAGTGTTTAACGACACGGCTCGCTATG 1177 Query 123271 TCGACCAG---GGCGGCAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACG 123327 | |||||| || ||||||||||| || || | || || || | || |||||||| | Sbjct 1178 TGGACCAGGGAGGAGGCAAACGCAAGGGATCGTTCGCCATTTACTTGGAGCCGTGGCATG 1237 Query 123328 TTGATGTGTACGATTT 123343 || |||| ||| || Sbjct 1238 CCGACGTGTTCGAGTT 1253 >seq14048 Length=3126 Score = 82.4 bits (90), Expect = 7e-11 Identities = 284/436 (65%), Gaps = 13/436 (3%) Strand=Plus/Plus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACG-GACGCGACATCGAAAACGCGAC 122974 || || ||| |||||||||| || | ||| | ||| |||| |||||| || ||| Sbjct 823 CAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGACG-GACATCCAAGCGGCGCT 881 Query 122975 CGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGC 123034 | || ||||| | ||||| || || || ||||||||||||| ||||| |||| Sbjct 882 GCAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCGACGCCCACGCTGTTTAA 941 Query 123035 CGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAG 123094 || || ||| | || ||| |||| ||||| || ||||| || ||| || ||| Sbjct 942 TGCAGGAACGCCGCGCCCGCAGCTGTCGTCGTGCTTCTTGCTGGCCATGCAGGACGACTC 1001 Query 123095 CATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGG 123154 ||| || ||||| || || | | ||||||| || ||||| | | || || Sbjct 1002 CATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCTGGAGG 1061 Query 123155 CATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGA-AGCCGCATCAGAAGCACCGACG 123213 || ||| | | ||||| | | | ||| || | ||| |||| | ||||| ||| Sbjct 1062 TATTGGCATCAGTATGCACAATATTCG-TGCCACGAACAGCTACATCCGCGGCACCAACG 1120 Query 123214 GAATCGCCTCC---GGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACG 123270 | | ||||| ||| || ||||||| |||| | || || | | || | | Sbjct 1121 G---CTCCTCCAATGGGATCATCCCCATGCTCAGAGTGTTTAACGACACGGCTCGCTATG 1177 Query 123271 TCGACCAG---GGCGGCAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACG 123327 | |||||| || ||||||||||| || || | || || || | || |||||||| | Sbjct 1178 TGGACCAGGGAGGAGGCAAACGCAAGGGATCGTTCGCCATTTACTTGGAGCCGTGGCATG 1237 Query 123328 TTGATGTGTACGATTT 123343 || |||| ||| || Sbjct 1238 CCGACGTGTTCGAGTT 1253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451892837768680