Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq14049 187 3e-42 seq14048 187 3e-42 seq18936 125 9e-24 >seq14049 Length=3113 Score = 187 bits (206), Expect = 3e-42 Identities = 941/1478 (64%), Gaps = 36/1478 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||||| |||| | ||||||| | |||| ||||| || | || ||||| || || Sbjct 2195 TACATGTTGGACGTGAACGGCTCAATGGACTCGTTGTTGCCGAGAATCTGGGCCGTCGAA 2136 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| ||| || |||||| || || | | | ||| Sbjct 2135 GCAGTGGGCATAGGAGCCACGAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACATTCTCC 2076 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTG-----AG-CTTTGTCTCCCCCTCCCACATATCAAAC 116076 ||||| || ||||||| | | || | ||| | ||| ||||| || ||| Sbjct 2075 TTGAGTGCAGCCCAGTCCCAAAGGCCAGAAGACGGAGTCACGCCC---CACATGTCGAAC 2019 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 |||| ||| || | | || ||||| |||| || ||||| || |||||| ||| Sbjct 2018 TGGAAGATGCCCTTGCTTGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTG 1959 Query 116137 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196 || | ||| || ||| | | |||| || || ||||| |||||| || Sbjct 1958 GCGATTTCCATTGACGTCTCCATCGAAGCGTAGTAGATCGTCTCGAAAATGTTCTTGTTA 1899 Query 116197 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAG 116255 | | | ||||| ||| ||||| ||| | || | ||||| | || || || Sbjct 1898 AGTTCACGGGCCTGCTCGCTCTCAAATGCGT-AGTTCATGAGGATAAAGGCGTCAGCAAG 1840 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 ||| ||||| || | ||||| || || || | ||| || ||||| || || | | || Sbjct 1839 ACCCTGGACGCCAATGCCAACCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCGCGAC 1780 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 || || | || || || ||| | || || || ||||| ||||| || | || Sbjct 1779 CGGGTAGTAGTTGACGTCAATGACCTTGTTCAGGTTACGAGTGACCACCTTGGTCACCTC 1720 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 | || || | ||| | || || | ||| | || |||| || ||||| | Sbjct 1719 GTACAGTTTCTGGTAGTTGAACACGCCATCCTCCAC---GA---ACTTGGGCAGGGCCAC 1666 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCA-GTGTACTCTATAATTTCCGTAC 116494 || ||||| || ||||| | ||| || | | | |||||||| || | || | Sbjct 1665 AGAGGCCAGGTTGCACACCGCCACCTCGTC-TGGTGACGTGTACTCCATCACCTCACAGC 1607 Query 116495 ACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 116554 |||| || | || ||||| | ||||| || || ||||| ||| ||| | Sbjct 1606 ACAAGTTGCTAGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGT 1547 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 ||||||||||||| | ||| |||||||| | || | | || || || ||| Sbjct 1546 CCTTGTAGAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA-- 1489 Query 116615 CATCGGC--GGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 116672 || | || ||| | || | ||| || ||||||| ||||||||| ||| || Sbjct 1488 CAGCTGCTGGGCGTTGATCGTCTTGCGGGCACGTCCCTCCTTCTCGTACTTCTCGTACAG 1429 Query 116673 GGCCTCAAACTCTTCACCCACAGCCTCTG-AGAGCCCTGGTGCCTTATCTGGACAGAAGA 116731 | || ||||| |||||| |||| || |||| | || || | | |||||||| | Sbjct 1428 CGTTTCGAACTCCTCACCC-CAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACA 1370 Query 116732 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 116791 | ||| | ||| |||| || ||||||||||| ||||| || | ||| || || Sbjct 1369 AACTCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGT 1310 Query 116792 AGAAGAGATCCCG-ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850 |||| | || || || | || | || | || || || ||||| |||| || Sbjct 1309 AGAACAAGTCGCGCGCACGGTGCAGC-TCGTTACCGTGGTTCTTACGCAGATCCAGGAAC 1251 Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGA 116907 || | | || || |||||||| |||| ||| | |||| || |||||||| | Sbjct 1250 TCGAACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCT 1191 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 || |||||| ||||| | ||||| ||||||| || | ||||| || ||||| ||| Sbjct 1190 CCTCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCA 1131 Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGC 117027 | || ||| || || || || || || |||| | | || ||| || Sbjct 1130 TTGGAGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTG 1071 Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 || |||||||| || |||||||| ||||| ||||||| | |||| || ||||||| Sbjct 1070 ATGCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATG 1011 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 || || || ||||| ||| | || | | |||||| ||||| || || | || Sbjct 1010 CCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGC 951 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATC 117206 || || || || || || || || |||||||| |||| | || | || ||||| || Sbjct 950 GTTCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTC 892 Query 117207 GTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAA 117266 ||| |||| || | | | ||||| | ||| || || | | || ||||| | Sbjct 891 GTACGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGAT 832 Query 117267 CATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTG--GAGGTAACTCTTCTCC 117324 ||| | ||||| |||| | | || | | ||||| |||||| | | ||||| Sbjct 831 CATCTGCTGGGGGCGCTCCACGACTTTGCCGTTCA--CTCTGAAGAGGTAGCCCCTCTCC 774 Query 117325 AAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCT 117362 || ||||||| ||||| ||| | | ||| ||||||| Sbjct 773 AACGTCTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCT 736 >seq14048 Length=3126 Score = 187 bits (206), Expect = 3e-42 Identities = 941/1478 (64%), Gaps = 36/1478 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||||| |||| | ||||||| | |||| ||||| || | || ||||| || || Sbjct 2195 TACATGTTGGACGTGAACGGCTCAATGGACTCGTTGTTGCCGAGAATCTGGGCCGTCGAA 2136 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| ||| || |||||| || || | | | ||| Sbjct 2135 GCAGTGGGCATAGGAGCCACGAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACATTCTCC 2076 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTG-----AG-CTTTGTCTCCCCCTCCCACATATCAAAC 116076 ||||| || ||||||| | | || | ||| | ||| ||||| || ||| Sbjct 2075 TTGAGTGCAGCCCAGTCCCAAAGGCCAGAAGACGGAGTCACGCCC---CACATGTCGAAC 2019 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 |||| ||| || | | || ||||| |||| || ||||| || |||||| ||| Sbjct 2018 TGGAAGATGCCCTTGCTTGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTG 1959 Query 116137 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196 || | ||| || ||| | | |||| || || ||||| |||||| || Sbjct 1958 GCGATTTCCATTGACGTCTCCATCGAAGCGTAGTAGATCGTCTCGAAAATGTTCTTGTTA 1899 Query 116197 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAG 116255 | | | ||||| ||| ||||| ||| | || | ||||| | || || || Sbjct 1898 AGTTCACGGGCCTGCTCGCTCTCAAATGCGT-AGTTCATGAGGATAAAGGCGTCAGCAAG 1840 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 ||| ||||| || | ||||| || || || | ||| || ||||| || || | | || Sbjct 1839 ACCCTGGACGCCAATGCCAACCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCGCGAC 1780 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 || || | || || || ||| | || || || ||||| ||||| || | || Sbjct 1779 CGGGTAGTAGTTGACGTCAATGACCTTGTTCAGGTTACGAGTGACCACCTTGGTCACCTC 1720 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 | || || | ||| | || || | ||| | || |||| || ||||| | Sbjct 1719 GTACAGTTTCTGGTAGTTGAACACGCCATCCTCCAC---GA---ACTTGGGCAGGGCCAC 1666 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCA-GTGTACTCTATAATTTCCGTAC 116494 || ||||| || ||||| | ||| || | | | |||||||| || | || | Sbjct 1665 AGAGGCCAGGTTGCACACCGCCACCTCGTC-TGGTGACGTGTACTCCATCACCTCACAGC 1607 Query 116495 ACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 116554 |||| || | || ||||| | ||||| || || ||||| ||| ||| | Sbjct 1606 ACAAGTTGCTAGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGT 1547 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 ||||||||||||| | ||| |||||||| | || | | || || || ||| Sbjct 1546 CCTTGTAGAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA-- 1489 Query 116615 CATCGGC--GGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 116672 || | || ||| | || | ||| || ||||||| ||||||||| ||| || Sbjct 1488 CAGCTGCTGGGCGTTGATCGTCTTGCGGGCACGTCCCTCCTTCTCGTACTTCTCGTACAG 1429 Query 116673 GGCCTCAAACTCTTCACCCACAGCCTCTG-AGAGCCCTGGTGCCTTATCTGGACAGAAGA 116731 | || ||||| |||||| |||| || |||| | || || | | |||||||| | Sbjct 1428 CGTTTCGAACTCCTCACCC-CAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACA 1370 Query 116732 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 116791 | ||| | ||| |||| || ||||||||||| ||||| || | ||| || || Sbjct 1369 AACTCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGT 1310 Query 116792 AGAAGAGATCCCG-ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850 |||| | || || || | || | || | || || || ||||| |||| || Sbjct 1309 AGAACAAGTCGCGCGCACGGTGCAGC-TCGTTACCGTGGTTCTTACGCAGATCCAGGAAC 1251 Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGA 116907 || | | || || |||||||| |||| ||| | |||| || |||||||| | Sbjct 1250 TCGAACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCT 1191 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 || |||||| ||||| | ||||| ||||||| || | ||||| || ||||| ||| Sbjct 1190 CCTCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCA 1131 Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGC 117027 | || ||| || || || || || || |||| | | || ||| || Sbjct 1130 TTGGAGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCATACTG 1071 Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 || |||||||| || |||||||| ||||| ||||||| | |||| || ||||||| Sbjct 1070 ATGCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATG 1011 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 || || || ||||| ||| | || | | |||||| ||||| || || | || Sbjct 1010 CCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGC 951 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATC 117206 || || || || || || || || |||||||| |||| | || | || ||||| || Sbjct 950 GTTCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTC 892 Query 117207 GTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAA 117266 ||| |||| || | | | ||||| | ||| || || | | || ||||| | Sbjct 891 GTACGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGAT 832 Query 117267 CATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTG--GAGGTAACTCTTCTCC 117324 ||| | ||||| |||| | | || | | ||||| |||||| | | ||||| Sbjct 831 CATCTGCTGGGGGCGCTCCACGACTTTGCCGTTCA--CTCTGAAGAGGTAGCCCCTCTCC 774 Query 117325 AAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCT 117362 || ||||||| ||||| ||| | | ||| ||||||| Sbjct 773 AACGTCTTGAAGCCAAAGTAGTCGTATTCAAAGTCCCT 736 >seq18936 Length=24579 Score = 125 bits (138), Expect = 9e-24 Identities = 311/463 (67%), Gaps = 23/463 (5%) Strand=Plus/Minus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCC----ATCGAG 127275 ||||| ||| ||| || || || ||||||||||| ||||| ||||| || |||||| Sbjct 21292 CCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGCATCGAG 21233 Query 127276 GCTGATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAAT 127335 || | ||||| | || || |||||||| ||| | || | | ||| || | Sbjct 21232 ----ATCATGTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACCCAG 21177 Query 127336 CTGTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCAT 127395 | | || || || || | ||| |||| ||||||| |||| | | || ||||| Sbjct 21176 CGAGTACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAATTCAT 21117 Query 127396 ACCGATGAGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTT 127454 |||||||| | || ||| |||| ||| | |||| | | ||| || |||| || | Sbjct 21116 GCCGATGAGCTC-CACGGGCAGCGAGTCGCGCACGAACTCGTGCTCGATCGCCACGGCGT 21058 Query 127455 CCCGTACGATGGCGTGAATAGTGTCCACCC-CAGGTCTATT-----GCGTAAAGTCTTGA 127508 | || ||||| |||| | | | || ||| | | || || | ||| | Sbjct 21057 CACGCACGATCTCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAGCTTCGAGTACAGC 20999 Query 127509 AGAGTTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGA 127568 || ||| || || || ||| | ||||| ||||| ||||||||| ||||||| Sbjct 20998 AGG----CAC-GCGAAGTCCGTGTGCATGCCCTCATCACGACTGATGAGTTCGTTCGAGA 20944 Query 127569 AGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAG 127628 ||| ||| || ||||||||||| |||||||| | |||||| || | || || ||||| | Sbjct 20943 AGCTCAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCG 20884 Query 127629 AGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTC 127671 ||||||| || ||||| || |||||||| | |||||||| Sbjct 20883 AGAAGAAAATGCCCTCTACCGCGGCGAACGCCAGCAGACGCTC 20841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613357404548280