Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq14049 230 4e-55 seq14048 230 4e-55 seq18936 152 8e-32 >seq14049 Length=3113 Score = 230 bits (254), Expect = 4e-55 Identities = 424/611 (69%), Gaps = 17/611 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||||||||| |||||||||||||||| | || | | | || ||||||||||| Sbjct 2583 CTTGTCCACGGTGAACTGAATGGCGTCAGCTTTCGGGCGTCCGCGCATGTAGTACATGCC 2524 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || ||||||| ||| |||| | ||||||||| | ||| ||||| | | || Sbjct 2523 CGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTTGCTGATCGTCGG 2464 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 |||||| |||||||||||||| |||||||| ||| ||| | |||||| || || || | Sbjct 2463 GTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTA-GGCGCCGCGGTCCGCCG 2405 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG- 204076 || || | ||||| ||||||| |||||||||||||||||| || ||| || | Sbjct 2404 ACAAATCCAGAATGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTGACGC 2345 Query 204077 TGTTGAGGCACATCTTCC-CACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CATC 204133 ||| || ||| || ||| | ||| | ||||| ||| |||| | ||| | Sbjct 2344 TGTCCGGG---ATCGACCTCACCTTCTGCACGGAGCCACCGTCAGCCAGGA-TCTGGTTA 2289 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 | | ||| | ||| |||||||| ||| || || || ||||| ||| | | Sbjct 2288 CGCACCTCGGGCGTCCAGATGCCCAAATCGATGAGTTCATTCATCAGGTACTTGTTCACG 2229 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 ||| || || |||| |||||| | ||| || ||| |||| ||||| || || | Sbjct 2228 ATCGTGAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGAACGGCTCAATG 2169 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 | |||||||||||||| |||||| || || || |||||||| ||||||| |||||| Sbjct 2168 GACTCGTTGTTGCCGAGAATCTGGGCCGTCGAAGCAGTGGGCATAGGAGCCACGAGCAGC 2109 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC-----GTGCA 204368 |||||||||| |||| || || | ||| || | | |||||| | || Sbjct 2108 GAGTTGCGCAGGCCGTGCTTGATCACATTCTCCTTGAGTGCAGCCCAGTCCCAAAGGCCA 2049 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 | | || |||||||||||||||||||||| |||||||| | || | || || Sbjct 2048 --GAAGACGGAGTCACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTTGCAGGCGAGC 1991 Query 204429 CCTTGTACGTC 204439 ||| | ||||| Sbjct 1990 CCTGGAACGTC 1980 >seq14048 Length=3126 Score = 230 bits (254), Expect = 4e-55 Identities = 424/611 (69%), Gaps = 17/611 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||||||||| |||||||||||||||| | || | | | || ||||||||||| Sbjct 2583 CTTGTCCACGGTGAACTGAATGGCGTCAGCTTTCGGGCGTCCGCGCATGTAGTACATGCC 2524 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || ||||||| ||| |||| | ||||||||| | ||| ||||| | | || Sbjct 2523 CGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTTGCTGATCGTCGG 2464 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 |||||| |||||||||||||| |||||||| ||| ||| | |||||| || || || | Sbjct 2463 GTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTA-GGCGCCGCGGTCCGCCG 2405 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG- 204076 || || | ||||| ||||||| |||||||||||||||||| || ||| || | Sbjct 2404 ACAAATCCAGAATGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTGACGC 2345 Query 204077 TGTTGAGGCACATCTTCC-CACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CATC 204133 ||| || ||| || ||| | ||| | ||||| ||| |||| | ||| | Sbjct 2344 TGTCCGGG---ATCGACCTCACCTTCTGCACGGAGCCACCGTCAGCCAGGA-TCTGGTTA 2289 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 | | ||| | ||| |||||||| ||| || || || ||||| ||| | | Sbjct 2288 CGCACCTCGGGCGTCCAGATGCCCAAATCGATGAGTTCATTCATCAGGTACTTGTTCACG 2229 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 ||| || || |||| |||||| | ||| || ||| |||| ||||| || || | Sbjct 2228 ATCGTGAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGAACGGCTCAATG 2169 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 | |||||||||||||| |||||| || || || |||||||| ||||||| |||||| Sbjct 2168 GACTCGTTGTTGCCGAGAATCTGGGCCGTCGAAGCAGTGGGCATAGGAGCCACGAGCAGC 2109 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC-----GTGCA 204368 |||||||||| |||| || || | ||| || | | |||||| | || Sbjct 2108 GAGTTGCGCAGGCCGTGCTTGATCACATTCTCCTTGAGTGCAGCCCAGTCCCAAAGGCCA 2049 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 | | || |||||||||||||||||||||| |||||||| | || | || || Sbjct 2048 --GAAGACGGAGTCACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTTGCAGGCGAGC 1991 Query 204429 CCTTGTACGTC 204439 ||| | ||||| Sbjct 1990 CCTGGAACGTC 1980 >seq18936 Length=24579 Score = 152 bits (168), Expect = 8e-32 Identities = 474/726 (65%), Gaps = 21/726 (3%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 |||| |||||||||||||||||||||||||| ||| || || ||||| | |||| Sbjct 21272 CACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGCATCGAGATCATGTCCATCCAGTCGAA 21213 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 ||||||||||||| ||| ||| | | || || | ||||| | ||| ||||| Sbjct 21212 CGGGTTCTTCACGTTGTAGATCTTGGACACACCCAGCGAGTACAGCAGGCGGTCGGCCAC 21153 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || |||||||| ||||| || | | || || || | ||| ||||| |||| Sbjct 21152 GAACTCGATGTACTGGCACATGAGCGCCGAATTCATGCCGATGAGCTCCACGGGCAGCGA 21093 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTT 159881 || || ||||| | ||| ||| | || || || ||| |||| || | || || Sbjct 21092 GTCGCGCACGAACTCGTGCTCGATCGCCACGGCGTCACGCACGATCT-CGTGCACGCGGC 21034 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 | | | ||||| || | | | | |||| |||||||| ||||| ||||| Sbjct 21033 TCTCCGGCAGCTTGTTCACCA---GCTTCGAGTACAGCAGGCACGCGAAGTCCGTGTGCA 20977 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 ||||| || ||| ||||| ||||| || | | | ||||| ||||||| || ||| Sbjct 20976 TGCCCTCATCACGACTGATGAGTTCGTTCGAGAAGCTCAGGCCAGGCATGAGACCGCGCT 20917 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCA 160060 |||||||| || || | ||| || | | | | || || || ||||| || || || Sbjct 20916 TCTTGAGCCAGAAGATAG-AGCAGAACGAGCCCGAGAAGAAAATGCCCTCTACCGCGGCG 20858 Query 160061 AACGCCACGAGCCTCTC-----ACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGG 160115 ||||||| || | ||| || | | | || ||| || ||||| | Sbjct 20857 AACGCCAGCAGACGCTCAGGGTACGACGACACACGAGGGTCGCA-----CCACCGAAGAG 20803 Query 160116 CCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCT 160175 |||| ||||||||| | | |||||| || ||||| ||| | ||| |||| Sbjct 20802 CCCAGCGAGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCTCGCAGCAAATAATCCT 20743 Query 160176 GCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACAT 160235 |||| |||||||||| || | |||||| ||| |||| ||| | ||| | | Sbjct 20742 TCTCCACTGCATCCTTGATGTACGTGTCGATCAGCAGCGAATACACTTCCGAGTGGATGT 20683 Query 160236 TTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTG 160295 | |||||||| ||||| ||| |||||| | || ||| | ||||||||| | Sbjct 20682 TCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCTTCCGGCACCTGCACCTCGTTGC 20623 Query 160296 TGAA--CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAA 160353 |||| | ||| |||| || | || || | ||||| ||| |||||||| |||| Sbjct 20622 TGAAGTTCATTG--CCAGGTTCTCGTTCACGATGCCGTCACTGGCAGCAAAGAACGCCAG 20565 Query 160354 CACGTG 160359 |||||| Sbjct 20564 CACGTG 20559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794961052918480