Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq18936 230 2e-55 seq19195 147 2e-30 seq18510 147 2e-30 seq17350 125 7e-24 seq18987 93.3 4e-14 >seq18936 Length=24579 Score = 230 bits (254), Expect = 2e-55 Identities = 534/796 (67%), Gaps = 13/796 (2%) Strand=Plus/Minus Query 132550 TAAAAGTCCGCATCCAAAGTAAAGGTGTCGTCCTTGGC--AAACATC-ACGCCAAATTTT 132606 || ||||| || |||| ||| || | |||| ||| ||||| | |||||| || Sbjct 21343 TAGAAGTCGGCGTCCAGAGTGAACACCTTCTCCTCGGCCGAAACACCCACGCCAGCCTTG 21284 Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 || |||||||| ||||| ||||| || || || |||| || || || | | Sbjct 21283 GAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGCATCGAGATCATGTCC 21224 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGC 132726 || | || || ||||| ||||||| ||||| | ||| | ||||| Sbjct 21223 ATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACCCAGCGAGTACAGCAGG 21164 Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGC 132786 | ||||||||||||||||||||| || ||||| | |||| | || | || | Sbjct 21163 CGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAATTCATGCCGATGAGCTCC 21104 Query 132787 ACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTC 132845 || ||||||| ||| | ||| ||| ||||||| || || ||||| ||||| || Sbjct 21103 ACGGGCAGCGAGTCGCGCACGAACTCGT-GCTCGATCGCCACGGCGTCACGCACGATCTC 21045 Query 132846 CCTAACGCGCGCCGCGCTC-GGCCG-TTG--CACCAAATGCTTGAACATCAAGCAAGCAA 132901 ||||| || ||| ||| | ||| ||||| | | | ||| || ||| || | Sbjct 21044 GTGCACGCG----GCTCTCCGGCAGCTTGTTCACCAGCTTCGAGTACAGCAGGCACGCGA 20989 Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961 |||| |||| |||||| || | ||||||||||| ||| ||| ||| |||| Sbjct 20988 AGTCCGTGTGCATGCCCTCATCACGACTGATGAGTTCGTTCGAGAAGCTCAGGCCAGGCA 20929 Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021 |||| ||||| || |||||||| || || | | ||| |||||| ||||| | ||||| Sbjct 20928 TGAGACCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAAATGCCCT 20869 Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGC 133081 | || || ||||| |||| ||| ||||| | ||| | | | || ||| | Sbjct 20868 CTACCGCGGCGAACGCCAGCAGACGCTCAGGGTACGACGACACACGAGGGTCGCACCACC 20809 Query 133082 GCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAAC 133141 | || ||||| ||||| | | |||||||| ||||| |||||||| || |||| Sbjct 20808 GAAGAGCCCAGCGAGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCTCGCAGCAAAT 20749 Query 133142 GGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGT 133201 ||||| | | | ||| |||||||| || |||||||| |||||||| Sbjct 20748 AATCCTTCTCCACTGCATCCTTGATGTACGTGTCGATCAGCAGCGAATACACTTCCGAGT 20689 Query 133202 GTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTT 133261 | | |||||| |||||||| || |||||||| ||||| || || || ||||||||| | Sbjct 20688 GGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCTTCCGGCACCTGCACCT 20629 Query 133262 CTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGG 133321 | | ||| | |||| || ||||| ||||||||||| ||||| || || || | Sbjct 20628 CGTTGCTGAAGTTCATTGCCAGGTTCTCGTTCACGATGCCGTCACTGGCAGCAAAGAACG 20569 Query 133322 CCAGCACGTGCTTGAT 133337 |||||||||||||||| Sbjct 20568 CCAGCACGTGCTTGAT 20553 >seq19195 Length=70740 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | |||||||| || ||||| ||||||| ||| | | Sbjct 21805 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 21746 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | ||||||| ||||| ||||| || ||| | ||||| Sbjct 21745 GACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCA 21687 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 21686 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTAAGCGACTACAA 21627 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | |||||||| | ||||||||| || | ||||| Sbjct 21626 CATCCAAAAGGAGTCTACGCTGCACCTAGTGCTGCGTCTGCGTGGCGG 21579 Score = 125 bits (138), Expect = 7e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 ||||||| ||||| ||||| || ||| | ||||| ||||| | || | ||| ||||| Sbjct 21949 AAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGATCTTCGCCGGCAAG 21890 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| |||| ||||| || | ||||||||||||||| ||||| | |||||||| Sbjct 21889 CAGCTGGAGGACGGCCGCACGCTAAGCGACTACAACATCCAGAAGGAGTCTACGCTGCAC 21830 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||| || | |||||| Sbjct 21829 CTGGTGCTGCGTCTGCGCGGCGGC 21806 Score = 102 bits (112), Expect = 8e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || ||| | |||||||| || ||||| ||||||| ||| | | ||| | Sbjct 22252 TTCGTGAAGACGTTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCGGACTCGATC 22193 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || | ||||||| ||||| ||||| || ||| | ||||| ||||| | Sbjct 22192 GACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTG 22133 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428 || | ||| ||||| |||||||| |||| ||||| || | ||||||||||||||| Sbjct 22132 ATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTAAGCGACTACAACATCCA 22077 >seq18510 Length=33167 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||||| |||||||| || |||||| ||||||| ||| || Sbjct 31486 AAGATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATCACCCTCGACGTGGAGCCC 31545 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||| | | | | || | || || | ||||| || || ||||| | ||| Sbjct 31546 TCGGACTCTATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGAC 31605 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||||| Sbjct 31606 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTAC 31665 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| ||||| |||| ||||||||||| || | || ||| Sbjct 31666 AACATCCAGAAGGAGTCGACGTTGCACCTGGTGCTGCGTCTGCGTGGTGGC 31716 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| || |||||| ||||||| ||| || | Sbjct 31717 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACAATCACCCTCGACGTGGAGCCCTCG 31776 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | || | || || | ||||| || || ||||| | ||||| Sbjct 31777 GACTCTATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAG 31836 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||||||| Sbjct 31837 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 31896 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| ||||| |||| ||||||||||| || | || ||| Sbjct 31897 ATCCAGAAGGAGTCGACGTTGCACCTGGTGCTGCGTCTGCGTGGTGGC 31944 >seq17350 Length=35721 Score = 125 bits (138), Expect = 7e-24 Identities = 146/192 (76%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 6592 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 6533 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||||| | | |||| | || | ||||||| ||||| ||||| || |||||| |||| Sbjct 6532 GACAGCATTGACAACG-TCAAGCAGAAAATCCAGGACAAGGAGGGCAT-CCCGCCTGACC 6475 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| ||| ||||||| Sbjct 6474 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACA 6415 Query 38422 ACATCCAAAAGG 38433 ||||||| |||| Sbjct 6414 ACATCCAGAAGG 6403 >seq18987 Length=31229 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/127 (79%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 38346 GGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCG 38404 ||||| |||||| ||||| ||||| || || | ||| ||||| |||||||| |||| || Sbjct 17941 GGAAT-CCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCG 17999 Query 38405 CACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGA 38463 ||| || |||||||||||||| ||||| ||| |||||||| ||||||| ||| || Sbjct 18000 CACTCTTTCGGACTACAACATCCAGAAGGAGAGC-ACGCTGCACCTGGTGCTTCGTCTGC 18058 Query 38464 GAGGCGG 38470 | || || Sbjct 18059 GTGGTGG 18065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500050676558720