Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq19255 154 1e-31 seq18863 96.9 3e-14 >seq19255 Length=18641 Score = 154 bits (170), Expect = 1e-31 Identities = 915/1444 (63%), Gaps = 43/1444 (3%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| || || | ||| ||||||||||||| || || ||||| |||||||| || || Sbjct 5780 GCAGAGACGTTCAAAATGCCATTGGCATCCACGTCGAACGTGACGTCAATTTGCGGCACA 5839 Query 517319 CCTCTCTGA-GCA--GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 517375 || | || ||| || |||||||| |||| || || | |||||| || || || Sbjct 5840 CCGC---GAGGCATGGGCGGGATCCCGTCCAGGTTGAACTTGCCCAGAAGATGGTTGTCG 5896 Query 517376 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 517435 | ||| | || ||||| ||||| | |||||| || | | |||||| || | Sbjct 5897 TAAGTCATAGAGCGCTCACCTTCGAACACTTGGATCAACACACCCGCTTGATTGTCGGCG 5956 Query 517436 TAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATT 517494 || || | | | |||| | ||||| ||||| || ||||| | ||| | || Sbjct 5957 TAGGTCG-AGAACGTCTGCGTCTTTTTCGCAGGAACCGTAGTGTTACGTGGAATGAGCTT 6015 Query 517495 GGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 517554 |||||| | |||||||| || || || |||||||| | || | ||||| | ||| | Sbjct 6016 GGTCATCACCCCACCTGCAGTCTCCAATCCAAGAGACAATGGGGCCACATCCAGTAGCAG 6075 Query 517555 AATATTTTG-AAGTTTTTCATC--AGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGC 517611 | || ||| || || | | | ||||| || || || || || | | ||| Sbjct 6076 CAGATCTTGCAACTTCGACGACGAACCGTGACCGCTTAGGATGGCCGCCTGCACGGTAGC 6135 Query 517612 ACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 517671 |||||| || || ||||| || || || | | | || | || || ||||| || Sbjct 6136 ACCATACGCGACTGCTTCGTCGGGGTTGATCGACTTGAACAGCTCCTTGCCGTTGAAGAA 6195 Query 517672 ATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTC 517731 || | ||||||| |||||||| ||||||| ||||| || || | || | || Sbjct 6196 ATCGATCAAAAGTTGTTGCACCTTAGGGATACGAGTCGATCCCCCGACCAGCACCACCTC 6255 Query 517732 ATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791 | ||| ||| ||| |||||| || || | ||| | | || || || | Sbjct 6256 GTTCACTTGTCCTTTCGACAGTTTAGAGTCGCGCAGAACCTGCGCCACCGGGTCCATCGT 6315 Query 517792 CGCTCTAAACAAGT--CTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 517849 | | ||| |||| ||| ||||| || || || ||| | |||| || || Sbjct 6316 CTTGCGAAAGAAGTCGCTGCACAAA--TCCTCAAACCGAGCACGCGTAATGGTCGAGTTG 6373 Query 517850 TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAG 517908 ||||||| || || | ||| ||||| | || || ||| | ||||| |||| || | Sbjct 6374 AAATCAATGCCGTCAAGCAACGAATCGATCTCGAT-GTACGCTTGAGCAGAAGTCGACAA 6432 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATT--- 517964 | ||| || ||||| || ||||| || | || | || | || || ||| | Sbjct 6433 CGTACGCTTCGCACGCTCGCATGCCGTACGAAGGCGCCGCATCGC----GCGTGAGTTCC 6488 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACG 518022 | || ||| | | || |||| || || || ||| || | || ||||| Sbjct 6489 CCGTTAAGTCTTTGCGGTTCTTCTTCTT--AAACTCCAGCACGAAATACTCGACGAGACG 6546 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 || ||||| |||||||| |||| | || | |||| ||| || | || | ||||| Sbjct 6547 GTTGTCAAAGTCTTCACCGCCCAGATGCGTGTCACCTGCCGTCGCCTTCACCTCGAAAAT 6606 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 || ||||||| || | ||| | || || ||||| ||||| | |||||| || | Sbjct 6607 ACCGTCTTCAATAGTGAGAAGCGAGACGTCGAATGTTCCTCCACCGAGATCAAAGATCAA 6666 Query 518143 TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 ||||| ||| | || || || | ||| || |||| ||||| ||||| || Sbjct 6667 CACATTGTGCTCT---CCACCCTTCTTGTCCAAACCGTAGGCAATTGCAGCGGCAGTGGG 6723 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 ||| || ||||| | || ||||| | ||||||||| || || ||||| || ||||| Sbjct 6724 TTCGTTGATAATACGCAGCACATTCAAACCAGCAATGGCGCCAGCGTCTTTTGTTGCTTG 6783 Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACC 518322 | ||| || || || ||||| || || || || | || || | | |||| || || Sbjct 6784 GCGTTGCGAGTCATTGAAATACGCGGGCACCGTCACCACTGCGTTCTTCACTTGCTTGCC 6843 Query 518323 AATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 |||| |||| || | | ||| || | | | ||| || || || | || || Sbjct 6844 AATAAAAGCCTCAGCGATCTCGCGCATCTTGATCAGCACCATGGACGATATCTCCTCGGG 6903 Query 518383 --GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC--AA 518438 |||| | |||||| ||| || | | || | | | || || || | | Sbjct 6904 CTGGAACGT--CTTGGACTCACCTTTAAACTGCACCACCACTTGGGGCTTGTTCTCGGAG 6961 Query 518439 CAT-TAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTT--TGGTCATTAA 518495 | | | | ||||| || ||||||| ||||| || | || ||||| |||| ||| Sbjct 6962 CCTCGAGTCACTTTGAACGGCCAGTGCTTCATGTCCGCCTG--CACTTCAGGGTCGGTAA 7019 Query 518496 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTT 518555 | | | || || || ||||| |||| || | |||||| || || || || ||| Sbjct 7020 ACTTGCGGCCGATCAACCGTTTGACATCGAACACCGTATTGTGTGCGTTCATAGCCACTT 7079 Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAG 518615 | | ||||| || || || |||| |||| | || || || | || || || || | Sbjct 7080 GGTTCTTGGCGGCGTCACCGATCAACCGTTCCGAATCCGTGAACGCCACGTAAGACGGCG 7139 Query 518616 TTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTA 518675 | ||||| || || || ||||| || || || || || |||| ||||| || || | Sbjct 7140 TCGTGCGGTTCCCCTGGTCATTGGCGATGATCTCCACGCGGTCATTCTGCCACACTCCAA 7199 Query 518676 CACA 518679 |||| Sbjct 7200 CACA 7203 >seq18863 Length=39129 Score = 96.9 bits (106), Expect = 3e-14 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 668847 GATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGT 668906 |||| |||| || ||||| |||||| | || || |||||||||||||||||||| | | Sbjct 28037 GATTGCGAGGCAAGGAAGGCCGTATTCGTGGTAACCTGATGGGAAAACGTGTCGATTTCT 27978 Query 668907 CTGCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCC 668964 | |||||||| || |||||| |||| || || |||| | || |||||||||| || Sbjct 27977 CGGCACGTACTGTCATTACTGCTGACCCGAACATTGAGATTGATCAAGTTGGTGTCCC 27920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779853108198298