Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq14049 145 9e-30 seq14048 145 9e-30 seq18936 105 8e-18 seq12749 82.4 9e-11 >seq14049 Length=3113 Score = 145 bits (160), Expect = 9e-30 Identities = 455/696 (65%), Gaps = 9/696 (1%) Strand=Plus/Plus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || ||||| ||||||| | |||| |||||||| ||| || | || | || Sbjct 754 TACTTTGGCTTCAAGACGTTGGAGAGGGGCTACCTCTTCAGAGTGAACGGCAAAGTCGTG 813 Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 || ||| ||| | ||| ||||||| || ||| | || ||||| | || || | Sbjct 814 GAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGACGGACATCCAA 873 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAAC 111724 | | || |||| ||||| ||||| | | || | |||| ||||| || || || Sbjct 874 GCGGCGCTGCAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCGACGCCCAC 932 Query 111725 CCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAA 111784 || || || || || || || | || || |||| || ||| | | || | | Sbjct 933 GCTGTTTAATGCAGGAACGCCGCGCCCGCAGCTGTCGTCGTGCTTCTTGCTGGCCATGCA 992 Query 111785 GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTG 111844 ||| || || || | ||||| |||| ||| |||| | || || ||||| ||||| Sbjct 993 GGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTG 1052 Query 111845 GGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGG 111904 |||||| ||||| || || || || || | | |||| || || | || Sbjct 1053 GGCTGGAGGTATTGGCATCAGTATGCACAATATTCGTGCCACGAACAGCTACATCCGCGG 1112 Query 111905 TACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964 || || || || |||| || || || ||||| | || ||||||| ||| || || Sbjct 1113 CACCAACGGCTCCTCCAATGGGATCATCCCCATGCTCAGAGTGTTTAACGACACGGCTCG 1172 Query 111965 CTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 |||||| |||| | || | ||||||||||| |||| | || | ||||| || Sbjct 1173 CTATGTGGACCAGGGAGGAGGCAAACGCAAGGGATCGTTCGCCATTTACTTGGAGCCGTG 1232 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 ||| || || | | |||||||| || ||||| ||||| ||| | || | || | Sbjct 1233 GCATGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAACGA-GCTGCACC 1291 Query 112082 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 |||| ||||| | |||| ||| || ||| | || || || ||||||||| | || |||| Sbjct 1292 GTGCGCGCGACTTGTTCTACGCCCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTCGAGG 1351 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTG 112199 | |||||| ||| | | || ||||| || | || || | ||||| | | ||| | | Sbjct 1352 CCAATGGCAAGTGGAGTTTGTTCTGTCCGAACGAAGCTCCTGATCTCTACAAGTGCTG-G 1410 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 ||||||||||| ||| | || ||| ||||||||| Sbjct 1411 GGTGAGGAGTTCGAAACGCTGTACGAGAAGTACGAG 1446 >seq14048 Length=3126 Score = 145 bits (160), Expect = 9e-30 Identities = 455/696 (65%), Gaps = 9/696 (1%) Strand=Plus/Plus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || ||||| ||||||| | |||| |||||||| ||| || | || | || Sbjct 754 TACTTTGGCTTCAAGACGTTGGAGAGGGGCTACCTCTTCAGAGTGAACGGCAAAGTCGTG 813 Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 || ||| ||| | ||| ||||||| || ||| | || ||||| | || || | Sbjct 814 GAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGACGGACATCCAA 873 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAAC 111724 | | || |||| ||||| ||||| | | || | |||| ||||| || || || Sbjct 874 GCGGCGCTGCAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCGACGCCCAC 932 Query 111725 CCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAA 111784 || || || || || || || | || || |||| || ||| | | || | | Sbjct 933 GCTGTTTAATGCAGGAACGCCGCGCCCGCAGCTGTCGTCGTGCTTCTTGCTGGCCATGCA 992 Query 111785 GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTG 111844 ||| || || || | ||||| |||| ||| |||| | || || ||||| ||||| Sbjct 993 GGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTG 1052 Query 111845 GGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGG 111904 |||||| ||||| || || || || || | | |||| || || | || Sbjct 1053 GGCTGGAGGTATTGGCATCAGTATGCACAATATTCGTGCCACGAACAGCTACATCCGCGG 1112 Query 111905 TACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964 || || || || |||| || || || ||||| | || ||||||| ||| || || Sbjct 1113 CACCAACGGCTCCTCCAATGGGATCATCCCCATGCTCAGAGTGTTTAACGACACGGCTCG 1172 Query 111965 CTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 |||||| |||| | || | ||||||||||| |||| | || | ||||| || Sbjct 1173 CTATGTGGACCAGGGAGGAGGCAAACGCAAGGGATCGTTCGCCATTTACTTGGAGCCGTG 1232 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 ||| || || | | |||||||| || ||||| ||||| ||| | || | || | Sbjct 1233 GCATGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAACGA-GCTGCACC 1291 Query 112082 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 |||| ||||| | |||| ||| || ||| | || || || ||||||||| | || |||| Sbjct 1292 GTGCGCGCGACTTGTTCTACGCCCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTCGAGG 1351 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTG 112199 | |||||| ||| | | || ||||| || | || || | ||||| | | ||| | | Sbjct 1352 CCAATGGCAAGTGGAGTTTGTTCTGTCCGAACGAAGCTCCTGATCTCTACAAGTGCTG-G 1410 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 ||||||||||| ||| | || ||| ||||||||| Sbjct 1411 GGTGAGGAGTTCGAAACGCTGTACGAGAAGTACGAG 1446 >seq18936 Length=24579 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 102178 CTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG 102237 ||||||| || | || || || || ||||| || |||||||| || || |||||| Sbjct 20839 CTGAGCGTCTGCTGGCGTTCGCCGCGGTAGAGGGCATTTTCTTCTCGGGCTCGTTCTGCT 20898 Query 102238 CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTA 102297 |||| | |||||||||||||| ||||||||||| || || ||||||| ||||| || | Sbjct 20899 CTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTGAGCTTCTCGAACGAACTCA 20958 Query 102298 TCTCTCGTGACGAGGG 102313 || |||||| ||||| Sbjct 20959 TCAGTCGTGATGAGGG 20974 >seq12749 Length=3153 Score = 82.4 bits (90), Expect = 9e-11 Identities = 243/369 (66%), Gaps = 17/369 (5%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||| ||||| || |||||| || || || || | || |||||| || || Sbjct 1408 CGATCGAAGCGTCCAGGGCGACACAGTGCTGGGTCCAGCACTTCCGGGCGATTTGTGGCC 1349 Query 15945 GCGATGACAA-----CAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCT 15999 || ||||| | | || | ||||| || | || |||||||| || |||| | || Sbjct 1348 GCAATGACGATCACTCCATTCGAGTTTCCTT--CGAATCCATCCATTTCCGTCAGCAACT 1291 Query 16000 GGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTC 16059 |||| | ||||| || ||||||||||||| | |||||| ||| | || Sbjct 1290 GGTTCAGCGTTTGCTCTCGTTCATCATTCGAGTTAAATCCACCA----CGCGCT--TTAG 1237 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC-- 16117 ||| ||||| |||||||| || |||| ||||| | | | || ||||| | || | Sbjct 1236 CCAATGCATCGATCTCATCGATAAAGATAATGCACTGCGGGTATT-GCGAG-GCCTGCGT 1179 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177 ||||||||| || || || || ||| ||| || | |||||||||||||| | || Sbjct 1178 AAAGAGATCTCGCACTCGAGCAGCTCCCCGACCCACGAGCATCTCCACAAAGTCCGACGC 1119 Query 16178 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 ||| || | ||| | ||| || ||| || | |||| || | || ||||| Sbjct 1118 GGAGCAAAACAAGAACGCAACACCAGCTTCCGAGGCCACCGCTCTAGCCAACAGCGTCTT 1059 Query 16238 ACCCGTACC 16246 |||||||| Sbjct 1058 GCCCGTACC 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620590837983760