Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq14170 147 3e-30 seq14049 129 7e-25 seq14048 129 7e-25 seq18936 86.0 7e-12 >seq14170 Length=32733 Score = 147 bits (162), Expect = 3e-30 Identities = 327/483 (68%), Gaps = 17/483 (4%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| |||||||| ||||| || || || | ||| | |||||||| ||| | ||||| Sbjct 12026 ATCTGCCGATCGAATCGACCAGGACGCAGAATAGCCTTGTCAAGAATGTCGGCGCGGTTC 11967 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | || |||| | || |||||| |||||||| || Sbjct 11966 GTACCAGCAAGCACCACCACTCC---CTCACTCGAGTTGAAACCATCCATTTCGACCAGC 11910 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG------GAGGGCATACCACCTGCCGAA 11667 | ||| || | ||| | |||||||||||| || ||| |||| | ||| Sbjct 11909 AACTGATTAAGCGTGTTTTCACGCTCATCATTACCTCCCGAGAAGTTACC-CTTGCTTCG 11851 Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 || | | || ||||| ||||| ||||||||||| ||||| || || ||| || || Sbjct 11850 TGCA-CGTGCC-ACAGCATCAATTTCATCGATGAACACGATGCAAGGAGCGTTCGCGCGG 11793 Query 11728 GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAG 11787 |||| | ||| || ||||| |||||| || || ||||| ||||||||||| | ||| Sbjct 11792 GCCTCCTTGAACAGGTCACGCACACGCGACGGACCCACACCAACGAACATCTCGATAAAG 11733 Query 11788 TTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | | |||| | ||||| ||| || || | | ||| ||||| | || || || Sbjct 11732 TCCGAACCAGAGATGCTGAA-GAAAGGCACGCTGGCCTCGCCAGCCGTAGCCTTCGCCAG 11674 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 || |||||||| ||||| |||| ||| | || || || || ||| ||||| ||||| Sbjct 11673 CAGCGTCTTACCTGTACCGGGTGGGCCAACAAGCAGCGCACCCTTGGGAATCTTCGCACC 11614 Query 11907 ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTT 11966 | | | |||||| | || ||||||||||||| ||| || |||| ||| Sbjct 11613 AAGCTCCGTGAAGCGCTTCTGGTTGCGAAGGAAGTCCACAAATTCCATAATCTCCTTCTT 11554 Query 11967 GGC 11969 ||| Sbjct 11553 GGC 11551 >seq14049 Length=3113 Score = 129 bits (142), Expect = 7e-25 Identities = 503/777 (65%), Gaps = 23/777 (3%) Strand=Plus/Minus Query 110278 TTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTT-TGTCGGTGTATTC 110336 ||||| || || | ||| || || |||||||| | ||||||| || || |||| || Sbjct 1679 TTGGGCAGGGCCACAGAGGCCAGGTTGCACACCGCCACCTCGTCTGGTGACG-TGTACTC 1621 Query 110337 CAAAATTTCCGTACACAAGTTG---GAACTCTTAATGACACCCAAGTTCTTCTGATTCGA 110393 || | || ||||||||| || | | || || | ||||| ||| ||||| Sbjct 1620 CATCACCTCACAGCACAAGTTGCTAGAGCGGATCGTG---CCGAGGTTCTGCTGGTTCGA 1564 Query 110394 TTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTT 110453 ||| |||| || ||||| ||||||||| | || || || || |||| | | Sbjct 1563 CTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTC 1504 Query 110454 GAGAATGGCCTTCCATACATCGGC--GGCGGGGACAGT--TGCGTTAGCGAGACCTTCCT 110509 || ||||| ||| || | || |||| || || |||| || | || |||| Sbjct 1503 CAGGATGGCGAACCA--CAGCTGCTGGGCGTTGATCGTCTTGCGG--GCACGTCCCTCCT 1448 Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTTC 110568 ||||||||| ||||| || || |||| || | ||| | | ||| | Sbjct 1447 TCTCGTACTTCTCGTACAGCGTTTCGAACTCCTCACCCCAGCACTTGT-AGAGATCAGGA 1389 Query 110569 GCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGG 110628 || | || |||||||| | ||| || ||| |||| || | ||||||||||||| Sbjct 1388 GCTTCGTTCGGACAGAACAAACTCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGG 1329 Query 110629 TCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCATCACCTTGGTT 110687 || || | ||||| || |||| | ||| || ||| | || | || | ||| ||||| Sbjct 1328 TCGGGCACCCACAGGGCGTAGAACAAGTCGCGCGCACGGTGCAGC-TCGTTACCGTGGTT 1270 Query 110688 GAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT 110747 || || |||| || || | | || | ||||| || || | || | |||| Sbjct 1269 CTTACGCAGATCCAGGAACTCGAACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAA 1210 Query 110748 GGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCT 110804 |||||||| || | || |||||| |||||||| || ||| | || || || || Sbjct 1209 CGATCCCTTGCGTTTGCCTCCTCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCT 1150 Query 110805 GAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGC 110864 |||||| || || || |||| ||| || || || || | || | || |||| Sbjct 1149 GAGCATGGGGATGATCCCATTGGAGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGC 1090 Query 110865 ACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTC 110924 |||||| | ||| ||| || |||||||| || |||||||| || || |||| Sbjct 1089 ACGAATATTGTGCATACTGATGCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTG 1030 Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984 |||| || | || || || ||||| || || ||| |||| | | ||||| || Sbjct 1029 CTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGA 970 Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 |||| ||| || || |||||||| ||||| || || || || ||||| || |||| Sbjct 969 CGACAGCTGCGGGCGCGGCGTTCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAA 913 >seq14048 Length=3126 Score = 129 bits (142), Expect = 7e-25 Identities = 503/777 (65%), Gaps = 23/777 (3%) Strand=Plus/Minus Query 110278 TTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTT-TGTCGGTGTATTC 110336 ||||| || || | ||| || || |||||||| | ||||||| || || |||| || Sbjct 1679 TTGGGCAGGGCCACAGAGGCCAGGTTGCACACCGCCACCTCGTCTGGTGACG-TGTACTC 1621 Query 110337 CAAAATTTCCGTACACAAGTTG---GAACTCTTAATGACACCCAAGTTCTTCTGATTCGA 110393 || | || ||||||||| || | | || || | ||||| ||| ||||| Sbjct 1620 CATCACCTCACAGCACAAGTTGCTAGAGCGGATCGTG---CCGAGGTTCTGCTGGTTCGA 1564 Query 110394 TTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTT 110453 ||| |||| || ||||| ||||||||| | || || || || |||| | | Sbjct 1563 CTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTC 1504 Query 110454 GAGAATGGCCTTCCATACATCGGC--GGCGGGGACAGT--TGCGTTAGCGAGACCTTCCT 110509 || ||||| ||| || | || |||| || || |||| || | || |||| Sbjct 1503 CAGGATGGCGAACCA--CAGCTGCTGGGCGTTGATCGTCTTGCGG--GCACGTCCCTCCT 1448 Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTTC 110568 ||||||||| ||||| || || |||| || | ||| | | ||| | Sbjct 1447 TCTCGTACTTCTCGTACAGCGTTTCGAACTCCTCACCCCAGCACTTGT-AGAGATCAGGA 1389 Query 110569 GCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGG 110628 || | || |||||||| | ||| || ||| |||| || | ||||||||||||| Sbjct 1388 GCTTCGTTCGGACAGAACAAACTCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGG 1329 Query 110629 TCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCATCACCTTGGTT 110687 || || | ||||| || |||| | ||| || ||| | || | || | ||| ||||| Sbjct 1328 TCGGGCACCCACAGGGCGTAGAACAAGTCGCGCGCACGGTGCAGC-TCGTTACCGTGGTT 1270 Query 110688 GAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT 110747 || || |||| || || | | || | ||||| || || | || | |||| Sbjct 1269 CTTACGCAGATCCAGGAACTCGAACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAA 1210 Query 110748 GGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCT 110804 |||||||| || | || |||||| |||||||| || ||| | || || || || Sbjct 1209 CGATCCCTTGCGTTTGCCTCCTCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCT 1150 Query 110805 GAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGC 110864 |||||| || || || |||| ||| || || || || | || | || |||| Sbjct 1149 GAGCATGGGGATGATCCCATTGGAGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGC 1090 Query 110865 ACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTC 110924 |||||| | ||| ||| || |||||||| || |||||||| || || |||| Sbjct 1089 ACGAATATTGTGCATACTGATGCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTG 1030 Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984 |||| || | || || || ||||| || || ||| |||| | | ||||| || Sbjct 1029 CTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGA 970 Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 |||| ||| || || |||||||| ||||| || || || || ||||| || |||| Sbjct 969 CGACAGCTGCGGGCGCGGCGTTCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAA 913 >seq18936 Length=24579 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/217 (69%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| ||| |||||| || || ||||| || ||||||||||| || | ||| Sbjct 20974 CCCTCATCACGACTGATGAGTTCGTTCGAGAAGCTCAGGCCAGGCATGAGACCGCGCTTC 20915 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||| | || || || || ||||| |||||||| || |||||| Sbjct 20914 TTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAAATGCCCTCTACCGCGGCGAAC 20855 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACTTGAGAGCCCAGTT 119689 || | |||||||||| | | ||| || |||| ||||| ||||||||| Sbjct 20854 GCCAGCAGACGCTCAG-GGTACGACGACACACGAGGGTCGCACCACCGAAGAGCCCAGCG 20796 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCT 119726 ||||| ||| | ||| |||| || | ||||||| Sbjct 20795 AGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCT 20759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588832194147400