Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq14049 194 2e-44 seq14048 194 2e-44 seq18936 105 8e-18 >seq14049 Length=3113 Score = 194 bits (214), Expect = 2e-44 Identities = 746/1155 (65%), Gaps = 25/1155 (2%) Strand=Plus/Minus Query 106250 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 106309 |||||||||||| | ||||| | || || ||||| || || || | |||| Sbjct 1877 TCAAATGCGTAGTTCATGAGGATAAAGGCGTCAGCAAGACCCTGGACGCCAATGCCAACC 1818 Query 106310 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 106369 || | ||| ||||| || ||||| ||||| | | || || || | || ||||||| Sbjct 1817 GGACGGTGACGCATGTTGGACTTGCGCGCCTCCGCGACCGGGTAGTAGTTGACGTCAATG 1758 Query 106370 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 106429 || ||| || || || || | ||| || | || | ||||| | || | || Sbjct 1757 ACCTTGTTCAGGTTACGAGTGACCACCTTGGTCACCTCGTACAGTTTCTGGTAGTTGAAC 1698 Query 106430 GTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCC 106489 || | ||| | || |||| || ||||| | || |||| ||||| || ||| Sbjct 1697 ACGCCATCCTCCAC---GA---ACTTGGGCAGGGCCACAGAGGCCAGGTTGCACACCGCC 1644 Query 106490 GTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTC 106549 ||| || |||||||| | | || ||||||||| | ||||| Sbjct 1643 ACCTCGTCTGGTGACGTGTACTCCATCACCTCACAGCACAAGTTGCTAGAGCGGATCGTG 1584 Query 106550 CCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTC 106609 || | |||| ||||| ||| |||| ||| ||||||||||||||| | ||| Sbjct 1583 CCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAACGGCACG 1524 Query 106610 CCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGC--TGGTACAATGG 106667 |||||||| |||| | | || || || ||||| | ||| || | | | Sbjct 1523 CCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTG 1464 Query 106668 CGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG 106727 || ||| ||||||||| ||||||||| ||| || | ||| |||||||||||| | | Sbjct 1463 CG--GGCACGTCCCTCCTTCTCGTACTTCTCGTACAGCGTTTCGAACTCCTCACCC-CAG 1407 Query 106728 CG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCA 106786 | | | ||||| | || || | || |||||||| | | ||| | ||| |||| Sbjct 1406 CACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACTCCACTTGCCATTGGCCTCG 1347 Query 106787 ACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGC 106845 || ||||||||||| ||||| || | |||||||| | || | || | ||| | || Sbjct 1346 ACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAACAAGTCGCGCGCACGGTGC 1287 Query 106846 CTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGG 106905 || ||| ||| ||||| || | || |||||||| | | || || ||||| || Sbjct 1286 AGCT-CGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCATGCCACGG 1228 Query 106906 CTCAAGATAGACTGCGATAGATCCCTTTCGACGCCCAGCT---TGATTTACATAGCGCGC 106962 ||| | || | |||| |||||||| || || || || | |||||||| || Sbjct 1227 CTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTCCCTGGTCCACATAGCGAGC 1168 Query 106963 TGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCG 107022 ||| ||||||| || | ||||| || || || |||| || || || || || || Sbjct 1167 CGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGGAGGAGCCGTTGGTGCCGCG 1108 Query 107023 AATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACT 107081 || || | || |||| | | || || || || |||||||| |||||||||| Sbjct 1107 GATGT-AGCTGTTCGTGGCACGAATATTGTGCATACTGATGCCAATACCTCCAGCCCACT 1049 Query 107082 TTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGT 107141 | ||||| ||| |||| | | || || | ||||| || | || ||||| |||| Sbjct 1048 TGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGCA 989 Query 107142 TGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTG 107201 |||| | | |||||| |||| |||||| | || || || ||||| || || || | Sbjct 988 TGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGTTCCTGCATTAAACAGCGTGG 929 Query 107202 GTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCA 107260 | || ||||| |||| | || | || ||||| ||||| |||| || | | | Sbjct 928 GCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTGCAGCGCCGCTTGG 870 Query 107261 ATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATG 107320 ||||| | ||||||||| | ||||| ||||| | ||| | ||||| |||| | Sbjct 869 ATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACG 810 Query 107321 AGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAAC 107378 | |||| | | | |||||| |||| | |||| | || |||| |||||||| Sbjct 809 ACTTTGCCGTTCA--CTCTGAAGAGGTAGCCCCTCTCCAACGTCTTGAAGCCAAAGTAGT 752 Query 107379 CAAAATCATAGTCCC 107393 | | ||| |||||| Sbjct 751 CGTATTCAAAGTCCC 737 >seq14048 Length=3126 Score = 194 bits (214), Expect = 2e-44 Identities = 746/1155 (65%), Gaps = 25/1155 (2%) Strand=Plus/Minus Query 106250 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 106309 |||||||||||| | ||||| | || || ||||| || || || | |||| Sbjct 1877 TCAAATGCGTAGTTCATGAGGATAAAGGCGTCAGCAAGACCCTGGACGCCAATGCCAACC 1818 Query 106310 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 106369 || | ||| ||||| || ||||| ||||| | | || || || | || ||||||| Sbjct 1817 GGACGGTGACGCATGTTGGACTTGCGCGCCTCCGCGACCGGGTAGTAGTTGACGTCAATG 1758 Query 106370 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 106429 || ||| || || || || | ||| || | || | ||||| | || | || Sbjct 1757 ACCTTGTTCAGGTTACGAGTGACCACCTTGGTCACCTCGTACAGTTTCTGGTAGTTGAAC 1698 Query 106430 GTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCC 106489 || | ||| | || |||| || ||||| | || |||| ||||| || ||| Sbjct 1697 ACGCCATCCTCCAC---GA---ACTTGGGCAGGGCCACAGAGGCCAGGTTGCACACCGCC 1644 Query 106490 GTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTC 106549 ||| || |||||||| | | || ||||||||| | ||||| Sbjct 1643 ACCTCGTCTGGTGACGTGTACTCCATCACCTCACAGCACAAGTTGCTAGAGCGGATCGTG 1584 Query 106550 CCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTC 106609 || | |||| ||||| ||| |||| ||| ||||||||||||||| | ||| Sbjct 1583 CCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAACGGCACG 1524 Query 106610 CCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGC--TGGTACAATGG 106667 |||||||| |||| | | || || || ||||| | ||| || | | | Sbjct 1523 CCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTG 1464 Query 106668 CGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG 106727 || ||| ||||||||| ||||||||| ||| || | ||| |||||||||||| | | Sbjct 1463 CG--GGCACGTCCCTCCTTCTCGTACTTCTCGTACAGCGTTTCGAACTCCTCACCC-CAG 1407 Query 106728 CG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCA 106786 | | | ||||| | || || | || |||||||| | | ||| | ||| |||| Sbjct 1406 CACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACTCCACTTGCCATTGGCCTCG 1347 Query 106787 ACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGC 106845 || ||||||||||| ||||| || | |||||||| | || | || | ||| | || Sbjct 1346 ACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAACAAGTCGCGCGCACGGTGC 1287 Query 106846 CTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGG 106905 || ||| ||| ||||| || | || |||||||| | | || || ||||| || Sbjct 1286 AGCT-CGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCATGCCACGG 1228 Query 106906 CTCAAGATAGACTGCGATAGATCCCTTTCGACGCCCAGCT---TGATTTACATAGCGCGC 106962 ||| | || | |||| |||||||| || || || || | |||||||| || Sbjct 1227 CTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTCCCTGGTCCACATAGCGAGC 1168 Query 106963 TGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCG 107022 ||| ||||||| || | ||||| || || || |||| || || || || || || Sbjct 1167 CGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGGAGGAGCCGTTGGTGCCGCG 1108 Query 107023 AATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACT 107081 || || | || |||| | | || || || || |||||||| |||||||||| Sbjct 1107 GATGT-AGCTGTTCGTGGCACGAATATTGTGCATACTGATGCCAATACCTCCAGCCCACT 1049 Query 107082 TTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGT 107141 | ||||| ||| |||| | | || || | ||||| || | || ||||| |||| Sbjct 1048 TGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGCA 989 Query 107142 TGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTG 107201 |||| | | |||||| |||| |||||| | || || || ||||| || || || | Sbjct 988 TGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGTTCCTGCATTAAACAGCGTGG 929 Query 107202 GTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCA 107260 | || ||||| |||| | || | || ||||| ||||| |||| || | | | Sbjct 928 GCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTGCAGCGCCGCTTGG 870 Query 107261 ATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATG 107320 ||||| | ||||||||| | ||||| ||||| | ||| | ||||| |||| | Sbjct 869 ATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACG 810 Query 107321 AGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAAC 107378 | |||| | | | |||||| |||| | |||| | || |||| |||||||| Sbjct 809 ACTTTGCCGTTCA--CTCTGAAGAGGTAGCCCCTCTCCAACGTCTTGAAGCCAAAGTAGT 752 Query 107379 CAAAATCATAGTCCC 107393 | | ||| |||||| Sbjct 751 CGTATTCAAAGTCCC 737 >seq18936 Length=24579 Score = 105 bits (116), Expect = 8e-18 Identities = 385/587 (66%), Gaps = 32/587 (5%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCC----ATCAAGGCTAATGTTTTC 117041 || || || || |||||||| || ||||||||||| || ||| || | |||| | Sbjct 21280 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGCATCGAGA-TCATGT---C 21225 Query 117042 CATAAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGA 117100 ||| |||| || || |||||| |||| | || | ||| |||| | || || | Sbjct 21224 CATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACCCAGCGAGTAC-AGCA 21166 Query 117101 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGAT 117160 | || || | ||| |||| ||||||| | |||| | | || ||||| |||||||| | Sbjct 21165 GGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAATTCATGCCGATGAGCT 21106 Query 117161 TACATGGG-AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 || ||| || | ||| | |||| | | ||| ||| | || || || |||||| Sbjct 21105 C-CACGGGCAGCGAGTCGCGCACGAACTCGTGCTCGATCGCCACGGCGTCACGCACGATC 21047 Query 117220 GCGTGGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC-CACGG 117274 |||| | | ||| || || | || || || | | ||| |||| Sbjct 21046 TCGTGCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAGCTTCGAGTACAGCAGGCACG- 20992 Query 117275 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTG 117334 | || ||| ||| | |||||||| || || ||||| || ||||||| ||||| | Sbjct 20991 CGAAGTCCGTGTGCATGCCCTCATCACGACTGATGAGTTCGTTCGAGAAGCTCAGGCCAG 20932 Query 117335 GCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATAC 117394 |||||||||| |||||||| | ||| | |||| |||||| || || |||||||| || | Sbjct 20931 GCATGAGACCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAAATGC 20872 Query 117395 CCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAAC 117453 |||| || || ||||| | || ||||| | | | || ||| || | ||| || Sbjct 20871 CCTCTACCGCGGCGAACGCCAGCAGACGCTCAGGGTACGA-CGACACACGAGGGTCGCAC 20813 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCT----TC 117509 || | ||||| ||||||||||| | || || | || | ||||||| | Sbjct 20812 CACCGAAGAGCCCAGCGAGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCTCGCAGC 20753 Query 117510 AAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCA 117556 |||||| | ||| || | ||||||| ||||| |||| |||| Sbjct 20752 AAATAA----TCCTTCTCCACTGCATCCTTGATGTACGTGTCGATCA 20710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589836748812920