Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq19255 125 6e-23 >seq19255 Length=18641 Score = 125 bits (138), Expect = 6e-23 Identities = 337/508 (66%), Gaps = 7/508 (1%) Strand=Plus/Minus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 |||||||| || ||||| |||| || || || || |||||||| || || ||| | Sbjct 7203 TGTGTTGGAGTGTGGCAGAATGACCGCGTGGAGATCATCGCCAATGACCAGGGGAACCGC 7144 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || || ||||| || | |||||||| | |||| || | ||||| || || || Sbjct 7143 ACGACGCCGTCTTACGTGGCGTTCACGGATTCGGAACGGTTGATCGGTGACGCCGCCAAG 7084 Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGA 550204 | |||| || || | |||||| | || |||| ||||| || || || | Sbjct 7083 AACCAAGTGGCTATGAACGCACACAATACGGTGTTCGATGTCAAACGGTTGATCGGCCGC 7024 Query 550205 AGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTG--TTA 550262 | |||| || | || ||||| || |||||||| ||||| ||| ||| || | Sbjct 7023 AAGTTTACCGACCCTGAAGTGCAGGCGGACATGAAGCACTGGCCGTTC-AAAGTGACTCG 6965 Query 550263 ATGTTTCTGGAA-AACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCA 550321 | | | | ||| || | | || | | | | || | | || || | || || Sbjct 6964 AGGCTCCGAGAACAAGCCCCAAGTGGTGGTGCAGTTTAAAGGTGAGTCCAAGACGTTCCA 6905 Query 550322 -CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGT 550380 || || | || || || ||||| | || || ||| | | || |||||| | Sbjct 6904 GCCCGAGGAGATATCGTCCATGGTGCTGATCAAGATGCGCGAGATCGCTGAGGCTTTTAT 6845 Query 550381 TGGTCAAG-AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 ||| |||| |||| | | | ||||| | || || || || ||||| |||||||| |||| Sbjct 6844 TGG-CAAGCAAGTGAAGAACGCAGTGGTGACGGTGCCCGCGTATTTCAATGACTCGCAAC 6786 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 | ||||| || ||||| ||||| |||||||| | ||||| || ||||||||||| | Sbjct 6785 GCCAAGCAACAAAAGACGCTGGCGCCATTGCTGGTTTGAATGTGCTGCGTATTATCAACG 6726 Query 550500 AACCTACTGCTGCTGCACTTGCATATGG 550527 |||| ||||| |||||| |||| || || Sbjct 6725 AACCCACTGCCGCTGCAATTGCCTACGG 6698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028263006866170