Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq19195 114 1e-20 seq18510 104 2e-17 >seq19195 Length=70740 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| || | | ||| | |||| || || ||||| || ||||| || ||||| ||| Sbjct 21576 TTTCCGCCACGCAGACGCAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCG 21635 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | || | | | || |||| ||||| || || || ||||||||||| || || || Sbjct 21636 CTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGG 21695 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || ||||| || || ||||| ||||| || || || | || | | ||| |||| ||| Sbjct 21696 GGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 21755 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || |||| ||| ||||| || || || || || || ||||||||| Sbjct 21756 ACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 21806 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||| ||||| || || || ||||||||||| || || || || ||||| || || Sbjct 22107 TCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 22166 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| ||||| || || ||| | || | | ||| |||| ||||| || || |||| | Sbjct 22167 TCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATC 22226 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAA 101460 || ||||| || || || || || || Sbjct 22227 GTCTTGCCCGTCAACGTCTTCACGAA 22252 >seq18510 Length=33167 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || || || || ||||| ||| | || | | | || |||| ||||| || Sbjct 31685 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCA 31626 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 || || |||| |||||| || || |||||||||||||| || || ||||| || || || Sbjct 31625 GCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTC 31566 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | || ||| || | ||||| || || |||| ||| ||||| || | || Sbjct 31565 ACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTGATCGTCTTGCCCGTCAGCGTC 31506 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 31505 TTGACGAAGATCTGCAT 31489 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || || || || ||||| ||| | || | | | || |||| ||||| || Sbjct 31913 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCA 31854 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 || || |||| |||||| || || |||||||||||||| || || ||||| || || || Sbjct 31853 GCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTC 31794 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | || ||| || | ||||| || || |||| || ||||| || | || Sbjct 31793 ACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTGATTGTCTTGCCCGTCAGCGTC 31734 Query 101453 TTTACAAATATCTGCATG 101470 || || || ||||||||| Sbjct 31733 TTGACGAAGATCTGCATG 31716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396184062583281