Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq19195 107 1e-18 seq17350 82.4 6e-11 >seq19195 Length=70740 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| ||| | || ||||| ||| ||||| || ||||| || | Sbjct 21579 CCGCCACGCAGACGCAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCGCTT 21638 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| |||| |||||| ||||| || |||| ||||| || || | ||| Sbjct 21639 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGG 21698 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| || || || || || | | || || |||| |||||| Sbjct 21699 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 21758 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||| ||||| || |||||||| || || || || |||||||| Sbjct 21759 TCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 21805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 48582 TGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGT 48641 || || ||||| || ||| | || |||| |||| |||||| ||||| || |||| Sbjct 22077 TGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAA 22136 Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 ||||| || || | ||| | |||||||||||| || || || || ||| | | Sbjct 22137 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATC 22196 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAA 48757 || || |||| |||||| || | ||| ||||| || |||||||| || || || || Sbjct 22197 GAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAA 22252 >seq17350 Length=35721 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || || || ||||| || || || | || |||| || | |||||| ||||| || ||| Sbjct 6405 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6464 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 || ||||| || || | || | |||||||||||| || || || || || | Sbjct 6465 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 6524 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | || |||| |||||| |||| ||| || || || ||||||| || || ||||| Sbjct 6525 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 6584 Query 48759 ATCTGCAT 48766 |||||||| Sbjct 6585 ATCTGCAT 6592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380846914590159