Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq18936 170 4e-37 seq14049 170 4e-37 seq14048 170 4e-37 >seq18936 Length=24579 Score = 170 bits (188), Expect = 4e-37 Identities = 482/737 (65%), Gaps = 17/737 (2%) Strand=Plus/Plus Query 25589 TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648 ||||| ||||| |||| |||||||| ||| ||| || || ||||||||||| ||| || Sbjct 20554 TCAAGCACGTGCTGGCGTTCTTTGCTGCCAGTGACGGCATCGTGAACGAGAACCTG-GCA 20612 Query 25649 A-GAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATG 25707 | || |||| || || |||||| ||| || || |||||||| |||||||| Sbjct 20613 ATGAACTTCAGCAACGAGGTGCAGGTGCCGGAAGCTCGCTGCTTCTACGGCTTCCAGATC 20672 Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACA 25764 |||||||| || | ||||| || |||||| | ||| ||||| |||||||| | Sbjct 20673 GCCATCGAGAACATCCACTCGGAAGTGTATTC---GCTGCTGATCGACACGTACATCAAG 20729 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 || | | |||| ||| || | | ||||||||| || || || | ||| | Sbjct 20730 GATGCAGTGGAGAAGGATTATTTGCTGCGAGCCATCGAGACGATCCCGTGCGTGGAGAAG 20789 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCT 25883 ||||| || ||||| | |||| | || | | | | | ||| ||||| || Sbjct 20790 AAGGCTCGCTGGGCTCTTCGGTGGTGCGAC-CCTCGTGTGTCGTCGTACCCTGAGCGTCT 20848 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCT 25942 | | || || || || || |||||||| || ||| || ||||| ||| | ||||||| Sbjct 20849 GCTGGCGTTCGCCGCGGTAGAGGGCATTTTCTTCTCGGGCTCGTTCTGC-TCTATCTTCT 20907 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||||||| || || |||||| || ||| ||| || ||||| |||||||| | | Sbjct 20908 GGCTCAAGAAGCGCGGTCTCATGCCTGGCCTGAGCTTCTCGAACGAACTCATCAGTCGTG 20967 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 | ||||| | |||| || || || |||||||| ||| || | || | || || Sbjct 20968 ATGAGGGCATGCACACGGACTTCGCGTGCCTGCTGTACTCG---AAGCTGGTGAAC-AAG 21023 Query 26063 CTTCTCAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121 || | |||| | ||| || ||| | || || |||| ||||||| | ||||| Sbjct 21024 CTGCCGGAGAGCCGCGTGCACGAGATCGTGCGTGACGCCGTGGCGATCGAGCACGAGTTC 21083 Query 26122 CNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATAC 26181 | |||||||| |||||| |||| ||| Sbjct 21084 GTGCGCGACTCGCTGCCCGTGGAGCTCATCGGCATGAATTCGGCGCTCATGTGCCAGTAC 21143 Query 26182 ATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACG 26241 || |||| |||||||||| ||||||| | |||||| | ||| |||||| | Sbjct 21144 ATCGAGTTCGTGGCCGACCGCCTGCTGTACTCGCTGGGTGTGTCCAAGATCTACAACGTG 21203 Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 ||||||||||||| ||||| | || ||| || | || ||||||||||| || || Sbjct 21204 AAGAACCCGTTCGACTGGATGGACATGATCTCGATGCAGGGCAAGACCAACTTTTTCGAG 21263 Query 26302 AAGAGGGTCGGCGACTA 26318 ||| | || ||||| || Sbjct 21264 AAGCGTGTGGGCGAGTA 21280 >seq14049 Length=3113 Score = 170 bits (188), Expect = 4e-37 Identities = 763/1196 (64%), Gaps = 57/1196 (5%) Strand=Plus/Minus Query 221503 AAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGC 221562 |||| |||| || || ||||| || || || || | || | ||| | | ||||||| Sbjct 1854 AAAGGCGTCAGCAAGACCCTGGACGCCAATGCCAACCGGACGGTGACGCATGTTGGACTT 1795 Query 221563 GGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGAT 221622 | ||| || | || || || |||||||||| || | ||||| ||||| |||||| Sbjct 1794 GCGCGCCTCCGCGACCGGGTAGTAGTTGACGTCAATGACCTTGTTCAGGTTACGAGTGAC 1735 Query 221623 GACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAG 221682 || || ||||||| ||| ||||||| |||||||| ||| || | Sbjct 1734 CACCTTGGTCACCTCGTACAGTTTCTGGTAGTTGAACAC---------GCCATCCT---- 1688 Query 221683 GGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTT 221742 |||| || | ||||| || ||||||||| ||||| ||||||||||| | Sbjct 1687 -----CCACGAACTTGGGCAGGGCCACAGAGGCCAGGTTGCACACCGCCACCTCGTC--T 1635 Query 221743 GTTG--GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGA 221800 | || || |||| || | ||| || | |||||| | ||| || || |||| Sbjct 1634 GGTGACGTGTACTCCATCACCTCACAGCACAAGTTGCTAGAGCGGATCGTGCCGAGGTTC 1575 Query 221801 TTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCC 221860 | || || |||||||| ||||| ||||||||||||||||| || || |||| ||||| Sbjct 1574 TGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCA 1515 Query 221861 AGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCA 221920 | ||| || |||| || | ||| || | |||| | | || ||||| ||| Sbjct 1514 ATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTGA---TCGTCTTGCGGGCA 1458 Query 221921 ---CCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCG 221977 ||||| ||| || ||| || ||| | || |||| ||||| | || | Sbjct 1457 CGTCCCTC---CTTCTCGTACTTCTCGTACAGCGTTTCGAACTCCTCACCCCAGCACTTG 1401 Query 221978 TCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTG---TTGTCTTTGACC 222034 | || | ||| | ||||| | || |||||| |||| ||| | | ||| Sbjct 1400 TAGAGATCAGGAGCTTCGTTCGGACAGAACAAACTCCA---CTTGCCATTGGCCTCGACG 1344 Query 222035 CTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCC 222094 | || |||||| ||||| || | |||||| || | || | || | | || ||| | Sbjct 1343 CGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAACAAGTCGCGCGCACGGTGCAGC 1284 Query 222095 TCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCC 222154 || |||| ||| || | |||||||| ||||| || | ||| || |||||||||||| Sbjct 1283 TCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCATGCCACGGCTCC 1224 Query 222155 AGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGA 222214 | || | ||| | | || || ||| || ||||| ||||| | || Sbjct 1223 AAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTCCCTGGTCCACATAGCGAGCCGTG 1164 Query 222215 GCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATG 222274 |||| || | | || | || | | || ||||| ||||||||||| ||| Sbjct 1163 TCGTTAAACACTCTGAGCATGGGGATGATCCCATTGGAGGAGCCGTTGGTGCCGCGGATG 1104 Query 222275 TA-CGCACCGCCGGCCCTCAGGTTACTG-GCAGAC--ATGCCGATACCACCGGCGTGTTT 222330 || | || ||| | | || || ||| || ||||| ||||| || || || Sbjct 1103 TAGCTGTTCG-TGGCAC---GAATATTGTGCATACTGATGCCAATACCTCCAGCCCACTT 1048 Query 222331 CGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGAC 222390 ||||| ||||| |||||| ||||| ||||||||| || ||||| |||| | Sbjct 1047 GGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGCAT 988 Query 222391 GTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGG 222450 | ||||| || || ||||||| ||| | | | | || |||||||||||||| Sbjct 987 GGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGTTCCTGCATTAAACAGCGTGGG 928 Query 222451 ACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCT-CTACGACTCTGGCGA 222509 | ||||| || ||| | | ||||| || |||||||||| | || | || | || Sbjct 927 CGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTGCAGCGCCGCTTG-GA 869 Query 222510 TGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAG 222569 ||| | ||| || || || | |||| ||| | |||||| | |||||| Sbjct 868 TGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCAC-- 811 Query 222570 GA-----CCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 || || || ||| || ||||| | |||| |||||||| |||||||| Sbjct 810 GACTTTGCCGTTCACTCTGAAG---AGGTAGCCCCTCTCCAACGTCTTGAAGCCAAAGTA 754 Query 222625 GTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTCCGACTTGTGCT 222680 || | |||||||| ||| |||| | | ||| | || ||||| |||||||| Sbjct 753 GTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCTCGTCCTTGTGCT 698 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 221061 TACGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCA 221120 |||||| |||| |||||| | ||| || || | || | || || |||||||| Sbjct 2290 TACGCACCTCGGGCGTCCAGATGCCCAAATCGATGAGTTCATTCATCAGGTACTTGTTCA 2231 Query 221121 CCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGA 221180 | | ||| || || | ||||| | | | ||||| ||| || |||||||| || | Sbjct 2230 CGATCGTGAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGAACGGCTCAA 2171 Query 221181 TGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCA 221240 || |||||||||||| || ||||| ||||| || |||||||| || ||||| |||| Sbjct 2170 TGGACTCGTTGTTGCCGAGAATCTGGGCCGTCGAAGCAGTGGGCATAGGAGCCACGAGCA 2111 Query 221241 GACTGTTGCGCAGTCCG 221257 | ||||||||| ||| Sbjct 2110 GCGAGTTGCGCAGGCCG 2094 >seq14048 Length=3126 Score = 170 bits (188), Expect = 4e-37 Identities = 763/1196 (64%), Gaps = 57/1196 (5%) Strand=Plus/Minus Query 221503 AAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGC 221562 |||| |||| || || ||||| || || || || | || | ||| | | ||||||| Sbjct 1854 AAAGGCGTCAGCAAGACCCTGGACGCCAATGCCAACCGGACGGTGACGCATGTTGGACTT 1795 Query 221563 GGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGAT 221622 | ||| || | || || || |||||||||| || | ||||| ||||| |||||| Sbjct 1794 GCGCGCCTCCGCGACCGGGTAGTAGTTGACGTCAATGACCTTGTTCAGGTTACGAGTGAC 1735 Query 221623 GACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAG 221682 || || ||||||| ||| ||||||| |||||||| ||| || | Sbjct 1734 CACCTTGGTCACCTCGTACAGTTTCTGGTAGTTGAACAC---------GCCATCCT---- 1688 Query 221683 GGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTT 221742 |||| || | ||||| || ||||||||| ||||| ||||||||||| | Sbjct 1687 -----CCACGAACTTGGGCAGGGCCACAGAGGCCAGGTTGCACACCGCCACCTCGTC--T 1635 Query 221743 GTTG--GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGA 221800 | || || |||| || | ||| || | |||||| | ||| || || |||| Sbjct 1634 GGTGACGTGTACTCCATCACCTCACAGCACAAGTTGCTAGAGCGGATCGTGCCGAGGTTC 1575 Query 221801 TTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCC 221860 | || || |||||||| ||||| ||||||||||||||||| || || |||| ||||| Sbjct 1574 TGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCA 1515 Query 221861 AGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCA 221920 | ||| || |||| || | ||| || | |||| | | || ||||| ||| Sbjct 1514 ATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTGA---TCGTCTTGCGGGCA 1458 Query 221921 ---CCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCG 221977 ||||| ||| || ||| || ||| | || |||| ||||| | || | Sbjct 1457 CGTCCCTC---CTTCTCGTACTTCTCGTACAGCGTTTCGAACTCCTCACCCCAGCACTTG 1401 Query 221978 TCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTG---TTGTCTTTGACC 222034 | || | ||| | ||||| | || |||||| |||| ||| | | ||| Sbjct 1400 TAGAGATCAGGAGCTTCGTTCGGACAGAACAAACTCCA---CTTGCCATTGGCCTCGACG 1344 Query 222035 CTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCC 222094 | || |||||| ||||| || | |||||| || | || | || | | || ||| | Sbjct 1343 CGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAACAAGTCGCGCGCACGGTGCAGC 1284 Query 222095 TCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCC 222154 || |||| ||| || | |||||||| ||||| || | ||| || |||||||||||| Sbjct 1283 TCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCATGCCACGGCTCC 1224 Query 222155 AGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGA 222214 | || | ||| | | || || ||| || ||||| ||||| | || Sbjct 1223 AAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTCCCTGGTCCACATAGCGAGCCGTG 1164 Query 222215 GCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATG 222274 |||| || | | || | || | | || ||||| ||||||||||| ||| Sbjct 1163 TCGTTAAACACTCTGAGCATGGGGATGATCCCATTGGAGGAGCCGTTGGTGCCGCGGATG 1104 Query 222275 TA-CGCACCGCCGGCCCTCAGGTTACTG-GCAGAC--ATGCCGATACCACCGGCGTGTTT 222330 || | || ||| | | || || ||| || ||||| ||||| || || || Sbjct 1103 TAGCTGTTCG-TGGCAC---GAATATTGTGCATACTGATGCCAATACCTCCAGCCCACTT 1048 Query 222331 CGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGAC 222390 ||||| ||||| |||||| ||||| ||||||||| || ||||| |||| | Sbjct 1047 GGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGCAT 988 Query 222391 GTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGG 222450 | ||||| || || ||||||| ||| | | | | || |||||||||||||| Sbjct 987 GGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGTTCCTGCATTAAACAGCGTGGG 928 Query 222451 ACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCT-CTACGACTCTGGCGA 222509 | ||||| || ||| | | ||||| || |||||||||| | || | || | || Sbjct 927 CGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTGCAGCGCCGCTTG-GA 869 Query 222510 TGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAG 222569 ||| | ||| || || || | |||| ||| | |||||| | |||||| Sbjct 868 TGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCAC-- 811 Query 222570 GA-----CCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 || || || ||| || ||||| | |||| |||||||| |||||||| Sbjct 810 GACTTTGCCGTTCACTCTGAAG---AGGTAGCCCCTCTCCAACGTCTTGAAGCCAAAGTA 754 Query 222625 GTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTCCGACTTGTGCT 222680 || | |||||||| ||| |||| | | ||| | || ||||| |||||||| Sbjct 753 GTCGTATTCAAAGTCCCTGTCGTGGATAATGGCCGAGTTGAGCTCGTCCTTGTGCT 698 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 221061 TACGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCA 221120 |||||| |||| |||||| | ||| || || | || | || || |||||||| Sbjct 2290 TACGCACCTCGGGCGTCCAGATGCCCAAATCGATGAGTTCATTCATCAGGTACTTGTTCA 2231 Query 221121 CCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGA 221180 | | ||| || || | ||||| | | | ||||| ||| || |||||||| || | Sbjct 2230 CGATCGTGAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGAACGGCTCAA 2171 Query 221181 TGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCA 221240 || |||||||||||| || ||||| ||||| || |||||||| || ||||| |||| Sbjct 2170 TGGACTCGTTGTTGCCGAGAATCTGGGCCGTCGAAGCAGTGGGCATAGGAGCCACGAGCA 2111 Query 221241 GACTGTTGCGCAGTCCG 221257 | ||||||||| ||| Sbjct 2110 GCGAGTTGCGCAGGCCG 2094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928618010931520