Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq14049 188 9e-43 seq14048 188 9e-43 seq18936 105 8e-18 >seq14049 Length=3113 Score = 188 bits (208), Expect = 9e-43 Identities = 484/724 (67%), Gaps = 15/724 (2%) Strand=Plus/Plus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| ||| | | |||||||| |||| || | |||| | |||| |||||| | Sbjct 737 GGGACTTTGAATACGACTACTTTGGCTTCAAGACGTTGGAGAGGGGCTACCTCTTCAGAG 796 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | | |||| || |||| ||| ||| | ||| ||||||| || || | ||||| Sbjct 797 --TGAACGGCAAAGTCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGCAT 854 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGT 75305 |||| | ||||| | | | || |||| ||||| ||||| || | || | | Sbjct 855 CCACAAGACGGACATCCAAGCGGCGCTGCAGACGTACGAGCTCATGTCGCAGAAGT-TCT 913 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTT 75365 ||| ||||| || || || || || ||||| || || || | |||||| |||| | Sbjct 914 TCACGCACGCGACGCCCACGCTGTTTAATGCAGGAACGCCGCGCCCGCAGCTGTCGTCGT 973 Query 75366 GCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGT 75425 ||||| | | |||| |||| ||||| || | || ||||| | || || | | ||| Sbjct 974 GCTTCTTGCTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAGT 1033 Query 75426 GTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCA 75485 | ||| ||||| ||||||||||| |||||||| || || || || | | |||| Sbjct 1034 GCGCGTGCATCTCCAAGTGGGCTGGAGGTATTGGCATCAGTATGCACAATATTCGTGCCA 1093 Query 75486 ATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 75544 || | || || || || || || || || |||| || || || ||||| | Sbjct 1094 CGAACAGCT-ACATCCGCGGCACCAACGGCTCCTCCAATGGGATCATCCCCATGCTCAGA 1152 Query 75545 GTATTTAACGCCACAGCGCGCTATGTAAATCA---AGCGGGGCGTCGCAAGGGGTCCATC 75601 || ||||||| ||| || |||||||| | || || || |||||||| || || Sbjct 1153 GTGTTTAACGACACGGCTCGCTATGTGGACCAGGGAGGAGGCAAACGCAAGGGATCGTTC 1212 Query 75602 GCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAAC 75661 || | |||||||| || ||||||||||| | | |||||||| || | || ||| Sbjct 1213 GCCATTTACTTGGAGCCGTGGCATGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAAC 1272 Query 75662 CAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCT 75720 || ||| ||| || || | ||| | || | || | |||||||| | || ||||| Sbjct 1273 CACGGTAACG-AGCTGCACCGTGCGCGCGACTTGTTCTACGCCCTGTGGGTGCCCGACCT 1331 Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780 ||||||||||| || |||| ||| | ||| | | |||||||| || | || || Sbjct 1332 GTTCATGAAGCGCGTCGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCGAACGAAGCTCC 1391 Query 75781 AGGTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG 75839 | ||||| | | || | |||||||||||| ||| | || ||| ||||| || ||| Sbjct 1392 TGATCTCTACAAGTGCTG-GGGTGAGGAGTTCGAAACGCTGTACGAGAAGTACGAGAAGG 1450 Query 75840 AGGG 75843 |||| Sbjct 1451 AGGG 1454 >seq14048 Length=3126 Score = 188 bits (208), Expect = 9e-43 Identities = 484/724 (67%), Gaps = 15/724 (2%) Strand=Plus/Plus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| ||| | | |||||||| |||| || | |||| | |||| |||||| | Sbjct 737 GGGACTTTGAATACGACTACTTTGGCTTCAAGACGTTGGAGAGGGGCTACCTCTTCAGAG 796 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | | |||| || |||| ||| ||| | ||| ||||||| || || | ||||| Sbjct 797 --TGAACGGCAAAGTCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGCAT 854 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGT 75305 |||| | ||||| | | | || |||| ||||| ||||| || | || | | Sbjct 855 CCACAAGACGGACATCCAAGCGGCGCTGCAGACGTACGAGCTCATGTCGCAGAAGT-TCT 913 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTT 75365 ||| ||||| || || || || || ||||| || || || | |||||| |||| | Sbjct 914 TCACGCACGCGACGCCCACGCTGTTTAATGCAGGAACGCCGCGCCCGCAGCTGTCGTCGT 973 Query 75366 GCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGT 75425 ||||| | | |||| |||| ||||| || | || ||||| | || || | | ||| Sbjct 974 GCTTCTTGCTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAGT 1033 Query 75426 GTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCA 75485 | ||| ||||| ||||||||||| |||||||| || || || || | | |||| Sbjct 1034 GCGCGTGCATCTCCAAGTGGGCTGGAGGTATTGGCATCAGTATGCACAATATTCGTGCCA 1093 Query 75486 ATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 75544 || | || || || || || || || || |||| || || || ||||| | Sbjct 1094 CGAACAGCT-ACATCCGCGGCACCAACGGCTCCTCCAATGGGATCATCCCCATGCTCAGA 1152 Query 75545 GTATTTAACGCCACAGCGCGCTATGTAAATCA---AGCGGGGCGTCGCAAGGGGTCCATC 75601 || ||||||| ||| || |||||||| | || || || |||||||| || || Sbjct 1153 GTGTTTAACGACACGGCTCGCTATGTGGACCAGGGAGGAGGCAAACGCAAGGGATCGTTC 1212 Query 75602 GCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAAC 75661 || | |||||||| || ||||||||||| | | |||||||| || | || ||| Sbjct 1213 GCCATTTACTTGGAGCCGTGGCATGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAAC 1272 Query 75662 CAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCT 75720 || ||| ||| || || | ||| | || | || | |||||||| | || ||||| Sbjct 1273 CACGGTAACG-AGCTGCACCGTGCGCGCGACTTGTTCTACGCCCTGTGGGTGCCCGACCT 1331 Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780 ||||||||||| || |||| ||| | ||| | | |||||||| || | || || Sbjct 1332 GTTCATGAAGCGCGTCGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCGAACGAAGCTCC 1391 Query 75781 AGGTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG 75839 | ||||| | | || | |||||||||||| ||| | || ||| ||||| || ||| Sbjct 1392 TGATCTCTACAAGTGCTG-GGGTGAGGAGTTCGAAACGCTGTACGAGAAGTACGAGAAGG 1450 Query 75840 AGGG 75843 |||| Sbjct 1451 AGGG 1454 >seq18936 Length=24579 Score = 105 bits (116), Expect = 8e-18 Identities = 385/587 (66%), Gaps = 32/587 (5%) Strand=Plus/Plus Query 64946 TGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGA----AGCCATC 65001 |||| |||| ||||| ||||||| | || ||| | ||||||| ||||||| Sbjct 20710 TGATCGACACGTACATCAAGGATGCAGTGGAGAAGGA----TTATTTGCTGCGAGCCATC 20765 Query 65002 CAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA- 65060 | || | || || | ||||||||||| ||||| | |||| ||| | Sbjct 20766 GAGACGATCCCGTGCGTGGAGAAGAAGGCTCGCTGGGCTCTTCGGTGGTGCGACCCTCGT 20825 Query 65061 GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTC 65120 || ||| || | | | ||||| || | ||||| || || ||||| || |||||||| Sbjct 20826 GTGTCG-TCGTACCCTGAGCGTCTGCTGGCGTTCGCCGCGGTAGAGGGCATTTTCTTCTC 20884 Query 65121 CGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180 || || |||||| |||| | ||| | |||||||| ||||||||||| ||||| |||| Sbjct 20885 GGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTGAGCTT 20944 Query 65181 CTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG-GAGCTCT 65239 ||| || ||||| || || |||||||| | ||| ||| || | |||| ||| | Sbjct 20945 CTCGAACGAACTCATCAGTCGTGATGAGGGCATGCACACGGACTTCG-CGTGCCTGCTGT 21003 Query 65240 TCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTGAAAGAG 65295 | || || || | || || ||| | | |||| |||||| || Sbjct 21004 ACTCGAAGCTG-GTGA---ACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCGTGAC 21059 Query 65296 GCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACT-CCCATGTAATCTCATCGGTAT 65354 || || | ||| ||| | | |||| | ||| | || ||| || | |||||||| || Sbjct 21060 GCCGTGGCGATCGAGCACGAGTTCGTGCGCGACTCGCTGCCCGTG-GAGCTCATCGGCAT 21118 Query 65355 GAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGT 65414 ||| || | | |||| | ||||||| |||| ||| | || || || || || | Sbjct 21119 GAATTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT-GTACTCGC 21177 Query 65415 TGGG-GTGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCC 65473 |||| ||| | || | |||| |||||| || || |||| |||| |||| | | Sbjct 21178 TGGGTGTGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGG---ACATGA-TC 21233 Query 65474 TTGAT----GGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | ||| || ||||||||||| || |||||||| || || || || Sbjct 21234 TCGATGCAGGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 21280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596423940075040