Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_021309.1 Length=74711 Score E Sequences producing significant alignments: (Bits) Value seq5267 134 7e-27 >seq5267 Length=12072 Score = 134 bits (148), Expect = 7e-27 Identities = 396/602 (66%), Gaps = 30/602 (5%) Strand=Plus/Plus Query 64816 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 64875 || |||||||| ||||||||||| || || || ||| | || ||| || | | Sbjct 6794 CGAGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACGACACTGGCACT----GAG 6849 Query 64876 GTG----GCCAATGCGCAGAAGGCCG---GTGGCAACGCCGCCTACATCGACGCTGAGCA 64928 || || | || |||||| ||| |||| | |||| || || || ||||| Sbjct 6850 TTGCATTGCAGAAGCTCAGAAGACCGAGGGTGGAGTCTGTGCCTTTATTGATGCAGAGCA 6909 Query 64929 CTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT 64988 | | | ||| || | |||||||||||||| || || ||| ||||| || || Sbjct 6910 CGCTATTGACGCCCACTACGCCAAGGCGCTGGGCGTCGACATCGACGCGCTGTACGTCTC 6969 Query 64989 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 65048 ||||||||| | |||||| | || |||||||||| |||| ||| || |||||| | Sbjct 6970 ACAGCCGGACTCGGGCGAGGAAGCGCTGGAGATCGCTGACACTCTCATCCGGTCTGG--A 7027 Query 65049 GCTGTCCATC--GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 65106 || || ||| || || | ||| ||||||||| || |||||||| || ||||| || Sbjct 7028 GCAGTGGATCTGGTGGTGCTCGACAGTGTGGCGGCTCTTGTGCCGCGAGCTGAGCTGGAG 7087 Query 65107 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 65166 || || || || ||| || | | ||||| || || || ||| ||||| | ||| Sbjct 7088 GGTGAGATGGGAGACCAGCAGATTGCGCTGCAGGCTCGGCTTATGAGCCAGGCACTACGC 7147 Query 65167 AAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTG 65223 |||||||| || | | |||| |||| ||| | | | | | |||||| | Sbjct 7148 AAGCTCACGGGGTCGTTGTCCAAGTCCAACTGCACCATTA---TTTTCCTGAACCAGATC 7204 Query 65224 CGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAG 65280 ||| ||||| | || || | | || | |||||| | ||| || || || | Sbjct 7205 CGCCAGAAGGTGGGTATCATCTTTGGGT--CACCCGAA-GTGACTTCC---GGTGGCACT 7258 Query 65281 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 65340 || || | | |||||| || || || ||||| |||| |||| | || ||||| Sbjct 7259 GCGCTGCGTTACTACGCGTCGGTGCGGCTGGATATCCGCCGCAAGACGGCCATCAAGGAG 7318 Query 65341 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCG 65400 ||||| | | || |||||| || ||| ||||| | |||||||||||||||| || Sbjct 7319 GGCGACCAAGTCGTGGGCAACGAAACGGTGGTAAAAGTAGCCAAGAACAAGCTGGCCTCG 7378 Query 65401 CC 65402 || Sbjct 7379 CC 7380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238893515841136