Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq18863 104 7e-17 seq18578 95.1 4e-14 seq17746 87.8 5e-12 seq18125 84.2 6e-11 >seq18863 Length=39129 Score = 104 bits (114), Expect = 7e-17 Identities = 176/254 (69%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 ||||| ||||| || || || | ||| || |||||||||||||| || || ||||| Sbjct 26462 CGACGTTGAATGTAGCCTGTCTCGGCTGTCTTCACAGCTGTATCAATAAGTCCTTCACGA 26521 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || |||||||| | ||||| ||| || ||| | | | ||| |||| Sbjct 26522 CCACCCATGGCGTGGAAGAAAAACTCTTGCGGGGTCAGACCCTTCAGATACGAGTTCTCG 26581 Query 302713 ACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTG 302769 ||||||||||| ||| || | ||| || ||| |||| ||||| || | Sbjct 26582 ACGAAACCACGGCTCTCAGGACCCAGATCATC---TTTGCCGTAGTGAGGCAGTGTGCGA 26638 Query 302770 TTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATC 302829 | | | ||||| || ||||| || || || || || ||||| |||| || | || Sbjct 26639 TGGTTGAATCCGTACGGAATACGTTTACCTTCGACATTTTGCTGACCCACACAAGCGATA 26698 Query 302830 ATCTGCGAAATATT 302843 |||||||| ||||| Sbjct 26699 ATCTGCGAGATATT 26712 >seq18578 Length=55264 Score = 95.1 bits (104), Expect = 4e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || ||||||||||||||||| ||||| ||| | || || || || || Sbjct 17299 CTTGATGGCCGAAGCAAGAGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATC 17358 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || || ||||| || ||||| |||||||| Sbjct 17359 AAGCACCAGGATGTGCGGGTTCAGCCACATAGCGGCGGCCAGCACGACCTTCACCTTCTG 17418 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 17419 ACCACCGGACAG 17430 >seq17746 Length=7919 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/90 (83%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 410484 TGTGCCCGCGTGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCG 410543 ||||| || || ||||||||||||||| |||||||| ||||||| |||||||||||| Sbjct 613 TGTGCGCGGCTGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCG 672 Query 410544 AGTCCCGTCGT-GGGTAAtttttttAATTT 410572 ||||||| ||| | ||| |||||| || || Sbjct 673 AGTCCCG-CGTCGCGTACTTTTTTCAAATT 701 Score = 84.2 bits (92), Expect = 6e-11 Identities = 64/73 (88%), Gaps = 2/73 (3%) Strand=Plus/Minus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 1894 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 1836 Query 410554 T-GGGTAAttttt 410565 | | ||||||||| Sbjct 1835 TCGCGTAATTTTT 1823 >seq18125 Length=21734 Score = 84.2 bits (92), Expect = 6e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || ||||| || | || |||||| ||||||||||| || | ||| | ||||| |||||| Sbjct 11611 GCGCCGTGCGAGACCAGACAATCGCGCTCCATTTCTCCCATACGCAATCCACCCTCGCGA 11670 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || | ||| || ||| || || || || | || ||||| ||||| || Sbjct 11671 GCACGACCTTCCATAGGTTGGCGCGTCAGCATCGTCACGGGACCACGCGAGCGCGAGTGG 11730 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| || | ||||||||||| || ||||||||||| | ||| || ||||| || Sbjct 11731 ATCTTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAACGTGGGTCCAATGAAAAT 11786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471449253268621