Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq18510 107 2e-18 seq19195 105 6e-18 seq17350 82.4 7e-11 >seq18510 Length=33167 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||||| || || || || || || ||||| || || || | Sbjct 31488 GATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATCACCCTCGACGTGGAGCCCTC 31547 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || ||||| || ||||| ||||| || || || || || Sbjct 31548 GGACTCTATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCA 31607 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || ||||||||||| | | || || || || Sbjct 31608 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 31667 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| | ||| ||||| |||| |||| || ||| Sbjct 31668 CATCCAGAAGGAGTCGACGTTGCACCTGGTGCTGCGTCTGCGTGGTGGC 31716 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || ||||| || || || | Sbjct 31717 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACAATCACCCTCGACGTGGAGCCCTCG 31776 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| ||||| || || || || || Sbjct 31777 GACTCTATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAG 31836 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||||||||| | | || || || ||| Sbjct 31837 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 31896 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| | ||| ||||| |||| |||| || ||| Sbjct 31897 ATCCAGAAGGAGTCGACGTTGCACCTGGTGCTGCGTCTGCGTGGTGGC 31944 >seq19195 Length=70740 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || |||||||| || || | | Sbjct 21805 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 21746 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| || || || || || || || Sbjct 21745 GACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 21686 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA---GATTAT 24880 || ||||||||||| ||||| || ||||||||||| || | || | | || || Sbjct 21685 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGA--CG-GCCGCACGCTAAGCGACTAC 21629 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || || ||| | ||| |||| |||| || || Sbjct 21628 AACATCCAAAAGGAGTCTACGCTGCACCTAGTGCTGCGTCTGCGTGGCGG 21579 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 6/156 (4%) Strand=Plus/Minus Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || || || ||||||||||| || || || || || || || || ||||||||||| Sbjct 21958 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGATCTTC 21899 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA---GATTATAACATTCAAAAGGAA 24895 ||||| || ||||||||||| || | || | | || || ||||| || ||||| Sbjct 21898 GCCGGCAAGCAGCTGGAGGA--CG-GCCGCACGCTAAGCGACTACAACATCCAGAAGGAG 21842 Query 24896 TCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||| ||||| |||| ||||||| ||| Sbjct 21841 TCTACGCTGCACCTGGTGCTGCGTCTGCGCGGCGGC 21806 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 24711 TCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAG 24770 |||| | || ||| | || || || || || |||||||| || || | | ||| | Sbjct 22254 TCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCGGACTCGA 22195 Query 24771 TAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTT 24830 | || | || || || || ||||||||||| || || || || || || || || |||| Sbjct 22194 TCGACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTT 22135 Query 24831 TGATCTTTGCCGGGAAACAGCTGGAGGA 24858 ||||||| ||||| || ||||||||||| Sbjct 22134 TGATCTTCGCCGGCAAGCAGCTGGAGGA 22107 >seq17350 Length=35721 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | || Sbjct 6592 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 6533 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || || || || || || || Sbjct 6532 GACAGCATTGACAACGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 6473 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 6472 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 6438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449787751877240