Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq17350 136 3e-27 seq18510 116 2e-21 seq19195 114 8e-21 seq18987 102 5e-17 >seq17350 Length=35721 Score = 136 bits (150), Expect = 3e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| |||||||| || |||| | || || || ||||| |||||||||| Sbjct 6403 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6462 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| |||| | ||||||||||| | ||||| || |||||| Sbjct 6463 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 6522 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || || | ||| || || | || |||||||| ||||| |||||||| |||| Sbjct 6523 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 6582 Query 34968 AGATCTGCATGAT 34980 ||||||||||||| Sbjct 6583 AGATCTGCATGAT 6595 >seq18510 Length=33167 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 31929 CAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 31870 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||||||||| || |||||||| |||| | || |||||||| Sbjct 31869 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTC 31810 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || || | || || || || ||| || || | ||| || || Sbjct 31809 CTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTGATTGT 31750 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| || ||||| || |||||||||||| Sbjct 31749 CTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 31716 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 31701 CAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 31642 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||||||||| || |||||||| |||| | || |||||||| Sbjct 31641 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTC 31582 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || || | || || || || ||| || || | ||| || || Sbjct 31581 CTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTGATCGT 31522 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| || ||||| || ||||||||||| Sbjct 31521 CTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31489 >seq19195 Length=70740 Score = 114 bits (126), Expect = 8e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||| || | || | ||| || ||||| | || |||||| || ||||| ||||| Sbjct 21576 TTTCCGCCACGCAGACGCAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCG 21635 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 ||| |||| | || ||||| ||||| ||||||||||||| || |||||||| | Sbjct 21636 CTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGG 21695 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | ||||||||||| | ||||| || || ||| | ||||| || | ||| Sbjct 21696 GGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 21755 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | || || ||||| ||||| | ||||| || |||||||||||| Sbjct 21756 ACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 21806 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| ||| |||| | || Sbjct 21821 CAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTGCGGCCGTC 21880 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||||| || |||||||| | || | ||||||||||| Sbjct 21881 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 21940 Query 34885 GTTTATTTTTTGTTTGAC 34902 | ||||| || || || Sbjct 21941 TTGGATTTTCTGCTTCAC 21958 Score = 82.4 bits (90), Expect = 5e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 34793 TGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGT 34852 || ||||| ||||| ||| |||| | || ||||| ||||| ||||||||||||| Sbjct 22077 TGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAA 22136 Query 34853 CGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATC 34912 || |||||||| | || | ||||||||||| | ||||| || || || | ||| Sbjct 22137 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATC 22196 Query 34913 GATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGA 34970 || || | ||| || || | || || ||||| ||||| | ||||| || |||| Sbjct 22197 GAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGA 22254 >seq18987 Length=31229 Score = 102 bits (112), Expect = 5e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||||||||||||| ||||| |||||||| || |||| | || Sbjct 18050 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 17991 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||||| ||||| |||||||||||||| || |||||||| |||| Sbjct 17990 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 17947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325615266080927