Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq19255 143 2e-28 >seq19255 Length=18641 Score = 143 bits (158), Expect = 2e-28 Identities = 699/1091 (64%), Gaps = 36/1091 (3%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| || || | ||| ||||||||||||| || || ||||| |||||||| || || Sbjct 5780 GCAGAGACGTTCAAAATGCCATTGGCATCCACGTCGAACGTGACGTCAATTTGCGGCACA 5839 Query 281486 CCTCTCTGA-GCA--GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 281542 || | || ||| || |||||||| |||| || || | |||||| || || || Sbjct 5840 CCGC---GAGGCATGGGCGGGATCCCGTCCAGGTTGAACTTGCCCAGAAGATGGTTGTCG 5896 Query 281543 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 281602 | ||| | || ||||| ||||| | |||||| || | | |||||| || | Sbjct 5897 TAAGTCATAGAGCGCTCACCTTCGAACACTTGGATCAACACACCCGCTTGATTGTCGGCG 5956 Query 281603 TAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATT 281661 || || | | | |||| | ||||| ||||| || ||||| | ||| | || Sbjct 5957 TAGGTCG-AGAACGTCTGCGTCTTTTTCGCAGGAACCGTAGTGTTACGTGGAATGAGCTT 6015 Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 281721 |||||| | ||||| || || || || |||||||| | || | ||||| | ||| | Sbjct 6016 GGTCATCACCCCACCTGCAGTCTCCAATCCAAGAGACAATGGGGCCACATCCAGTAGCAG 6075 Query 281722 AATATTTTG-AAGTTTTTCATC--AGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGC 281778 | || ||| || || | | | ||||| || || || || || | | ||| Sbjct 6076 CAGATCTTGCAACTTCGACGACGAACCGTGACCGCTTAGGATGGCCGCCTGCACGGTAGC 6135 Query 281779 ACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838 |||||| || || ||||| || || || | | | || | || || ||||| || Sbjct 6136 ACCATACGCGACTGCTTCGTCGGGGTTGATCGACTTGAACAGCTCCTTGCCGTTGAAGAA 6195 Query 281839 ATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTC 281898 || | ||||||| |||||||| ||||||| ||||| || || | || | || Sbjct 6196 ATCGATCAAAAGTTGTTGCACCTTAGGGATACGAGTCGATCCCCCGACCAGCACCACCTC 6255 Query 281899 ATGCACCTGTGATTTATCCAGTTTTGAATC-CAATAAAACTTTTTCAACGGGTTCA-AGA 281956 | ||| ||| ||| |||||| || || | || || || ||||| || | Sbjct 6256 GTTCACTTGTCCTTTCGACAGTTTAGAGTCGCGCAGAACCTGCGCCACCGGGTCCATCGT 6315 Query 281957 CCAGCTCTAAACAAGT--CTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014 | | | ||| |||| ||| ||||| || || || ||| | |||| || | Sbjct 6316 CTTG--CGAAAGAAGTCGCTGCACAAA--TCCTCAAACCGAGCACGCGTAATGGTCGAGT 6371 Query 282015 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGAT 282073 | ||||||| || || | ||| ||||| | || || ||| | ||||| |||| || Sbjct 6372 TGAAATCAATGCCGTCAAGCAACGAATCGATCTCGAT-GTACGCTTGAGCAGAAGTCGAC 6430 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATT- 282131 | | ||| || ||||| || ||||| || | || | || | || || ||| | Sbjct 6431 AACGTACGCTTCGCACGCTCGCATGCCGTACGAAGGCGCCGCATCGC----GCGTGAGTT 6486 Query 282132 --GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGA 282187 | || ||| | | || |||| || || || ||| || | || ||| Sbjct 6487 CCCCGTTAAGTCTTTGCGGTTCTTCTTCTT--AAACTCCAGCACGAAATACTCGACGAGA 6544 Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || ||||| |||||||| |||| | || | |||| ||| || | || | |||| Sbjct 6545 CGGTTGTCAAAGTCTTCACCGCCCAGATGCGTGTCACCTGCCGTCGCCTTCACCTCGAAA 6604 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | || ||||||| || | ||| | || || ||||| ||||| | |||||| || Sbjct 6605 ATACCGTCTTCAATAGTGAGAAGCGAGACGTCGAATGTTCCTCCACCGAGATCAAAGATC 6664 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 | ||||| ||| | || || || | ||| || |||| ||||| ||||| Sbjct 6665 AACACATTGTGCTCT---CCACCCTTCTTGTCCAAACCGTAGGCAATTGCAGCGGCAGTG 6721 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||| || ||||| | || ||||| | ||||||||| || || ||||| || ||| Sbjct 6722 GGTTCGTTGATAATACGCAGCACATTCAAACCAGCAATGGCGCCAGCGTCTTTTGTTGCT 6781 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || | ||| || || || ||||| || || || || | || || | | |||| || Sbjct 6782 TGGCGTTGCGAGTCATTGAAATACGCGGGCACCGTCACCACTGCGTTCTTCACTTGCTTG 6841 Query 282488 CCAATATAAGC 282498 |||||| |||| Sbjct 6842 CCAATAAAAGC 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739671412246458