Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq18510 107 4e-18 seq19195 102 2e-16 >seq18510 Length=33167 Score = 107 bits (118), Expect = 4e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||||| || || || ||||| || || || || Sbjct 31715 CCACCACGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTC 31656 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||| ||||| || | || || || || || Sbjct 31655 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 31596 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || |||||||| ||||| ||||| ||||| | || || || || Sbjct 31595 ATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACATTGTCAATAGAGTCCGAGGGCTCCAC 31537 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| |||| |||||| || || |||||||| Sbjct 31536 GTCGAGGGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31489 >seq19195 Length=70740 Score = 102 bits (112), Expect = 2e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| |||| |||||| ||||| || || || || || || || | Sbjct 21579 CCGCCACGCAGACGCAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCGCTT 21638 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || || ||||| | | || || || || || Sbjct 21639 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGG 21698 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| ||||| || || ||||| || || || |||| || || || || Sbjct 21699 ATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 21757 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| ||||||||||| || || |||||||| Sbjct 21758 GTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 21805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981581481481687