Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq17656 251 8e-62 >seq17656 Length=11375 Score = 251 bits (278), Expect = 8e-62 Identities = 492/712 (69%), Gaps = 25/712 (4%) Strand=Plus/Plus Query 146878 AGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTG 146937 ||| | ||||| || || ||| | | | ||||| | | || ||||| |||||||| Sbjct 727 AGCGTCGGGAATGGCCGTGGGGTTCGCGTGAGCTGCTTCTGAAGAGGCTCAACGTGGTTC 786 Query 146938 AGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACG 146997 ||||| || |||||||| || | ||| | || || || || || || |||| ||| Sbjct 787 AGGTAAACATGCGCGTCACCAATCACGTGGATGAATTCACCTGGTTTCAGCCCGGCCACT 846 Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 || ||||| | |||||||||| |||||| || |||||||| || || || || ||| Sbjct 847 TGTGCCACTAGCCGCGTGAGCAGCGCGTAGCTTGCAATGTTGAACGGCACGCCGAGTCCC 906 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 ||||| | || | |||||||| |||||| |||||||| ||||| |||||||| |||||| Sbjct 907 ATGTCGGCTGAGCGCTGGTACATCTGGCAGGAGAGCTCTCCGTCCGCCACGTAGAACTGG 966 Query 147118 CACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAG 147177 || | ||||| ||||| ||||||||||| || ||| || ||||||||||| || || Sbjct 967 CAGAACATGTGACACGGTGGCAGCGCCATCTCGTTCAGATCGGCGGGGTTCCACGCAGAC 1026 Query 147178 ACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGC-- 147234 | || | ||| | | | || ||||| || | || | || ||||||||| Sbjct 1027 AAAACAATCCGGCGGTCGGTC-GGGTTGGTCCGCAGCTTGTGAAT----CACCTCAGCAA 1081 Query 147235 --TGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCAAAG 147291 |||||||| ||||| || ||||| | | ||| |||| ||| |||| |||||| Sbjct 1082 GTTGGTCCACACCCTGTCCAGTGTAGTCCG-CATGCATGTCCGTATACTTGGCTCCAAAG 1140 Query 147292 TGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGA---GAAG 147348 || | ||||||||||||||| || || || |||||||| ||| | |||| || Sbjct 1141 TGGCGCCACTGGAAGCCGTAGACCGGTCCAAGGTCGCC-CACTTCC--CGCGATTCCAAC 1197 Query 147349 CC-CGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCA-CTCCCTTGG 147406 || || | | | | | |||| | || || | ||||||||||| | ||| | | Sbjct 1198 CCTCGACTG-TCCAAATACTCTCGAGATCCATTTCCGTCCCAGATGTGGATATCCTTCTG 1256 Query 147407 CGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCC 147466 | | ||| | | | |||| ||| | | |||||| ||||||||||| || | Sbjct 1257 CTG-CAGCGTGTGCGCATTCGTGTCGCCACTAACGAACCACAGCAGCTCCTCGGCCACAC 1315 Query 147467 CCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCCTCAGCGAATACC 147523 | | ||| ||||| | |||||| || ||||| |||||| | |||||| || ||| Sbjct 1316 CGCGCCAGAAGACGCGCTTGGTCGTGAGCAGCGGGAACACGTTGTCCCTGAGACTGAACC 1375 Query 147524 TCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCCCT 147575 || ||| | ||||| | |||| ||||| || ||||| | ||| |||| Sbjct 1376 TCATCTGCGCTCCAAAGAGCGACAAGGTGCCTGTCCCCGTGCGGTCTCCCCT 1427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583345534111200