Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq19195 154 1e-32 seq18510 134 1e-26 seq14049 118 1e-21 seq14048 118 1e-21 seq17350 113 5e-20 >seq19195 Length=70740 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| ||| ||||| ||||| || |||||||| |||||||||||| Sbjct 21576 TTTCCGCCACGCAGACGCAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCG 21635 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | ||| || ||||| ||||| || || |||||||||||||| || || Sbjct 21636 CTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGG 21695 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || ||||| ||||| || || || ||| | | ||| |||| ||| Sbjct 21696 GGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 21755 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || || || || || || || || ||||| || ||||| Sbjct 21756 ACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 21805 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 134529 TGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAA 134588 || ||||||||||||| | ||| | ||| || ||||| ||||| || || |||||| Sbjct 22077 TGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAA 22136 Query 134589 CGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT 134648 |||||||| || || || ||||| || || ||||| ||||| || || || ||| | Sbjct 22137 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATC 22196 Query 134649 GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAA 134704 | ||| |||| ||||||||||| || || || || || || || || || ||||| Sbjct 22197 GAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAA 22252 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 21816 AGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTGCGG 21875 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||||||||||||| || || || ||||| || Sbjct 21876 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCC 21935 Query 134616 TTTTCTTGAATTTTTTGTTTGAC 134638 || ||||| ||||| || || || Sbjct 21936 TTGTCTTGGATTTTCTGCTTCAC 21958 >seq18510 Length=33167 Score = 134 bits (148), Expect = 1e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| | ||| || ||||| || ||||||||||||| | ||| | Sbjct 31706 AGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 31647 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| ||||||||| || ||||| |||||||| Sbjct 31646 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCC 31587 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || ||| | | ||| || | ||||||||||| || Sbjct 31586 TTGTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTG 31527 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | || || ||||| || ||||| ||| Sbjct 31526 ATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTTG 31485 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| | ||| || ||||| || ||||||||||||| | ||| | Sbjct 31934 AGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 31875 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| ||||||||| || ||||| |||||||| Sbjct 31874 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCC 31815 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || ||| | | ||| || | ||||||||||| || Sbjct 31814 TTGTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTG 31755 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| || ||||| Sbjct 31754 ATTGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31717 >seq14049 Length=3113 Score = 118 bits (130), Expect = 1e-21 Identities = 378/575 (66%), Gaps = 21/575 (4%) Strand=Plus/Plus Query 7522 GGCTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGC 7581 |||||| | || | | | |||||| || || ||| || || || ||| | ||||| Sbjct 781 GGCTACCTCTTCAGAGTGAACGGCAAAGTCGTGGAGCGCCCCCAGCAGATGATCATGCGC 840 Query 7582 GTGGCGGTGGGCATTCAC--GGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGA 7639 |||||| ||||||| ||| | || ||||| | || || || | |||||| | | | Sbjct 841 GTGGCGCTGGGCATCCACAAGACG--GACATCCAAGCGGCGCTGCAGACGTACGAGCTCA 898 Query 7640 TGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCG- 7698 |||| ||| || |||||||| ||||||| ||||| || || || |||| Sbjct 899 TGTCGCAGAAGTTCTTCACGCACGCGACGCCCACGCTGTTTAATGCAGGAAC-GCCGCGC 957 Query 7699 CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTAC 7758 || || |||| ||||| || ||||| |||||| || ||| ||| || ||||| ||| Sbjct 958 CCGCAGCTGTCGTCGTGCTTCTTGCTGGCCATGCAGGACGACTCCATTGAGGGCATCTAC 1017 Query 7759 AACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGG--TCTGAACG 7816 ||||||| | ||||| || ||||| | | || || || || || | | | Sbjct 1018 GACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCTGGAGGTATTGGCATCAGTATG 1077 Query 7817 TAAACGA--CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGG 7874 | | | ||||| | | ||| ||| |||| ||||||||| ||| || Sbjct 1078 CACAATATTCGTGC-CACGAAC---AGCTACATCCGCGGCACCAACGGCTCCTCCAATGG 1133 Query 7875 TTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGA-- 7932 | |||||| | | ||||| || || ||| || |||| |||||||| ||| Sbjct 1134 GATCATCCCCATGCTCAGAGTGTTTAACGACACGGCTCGCTATGTGGACCAGGGAGGAGG 1193 Query 7933 -AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGT 7991 || ||||| || | ||||| || |||||||||||||| || ||| | | || | Sbjct 1194 CAAACGCAAGGGATCGTTCGCCATTTACTTGGAGCCGTGGCATGCCGACGTGTTCGAGTT 1253 Query 7992 GCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCA--AAGCGCGCGATCTATTCTTC 8049 || |||||||| ||| ||| ||| | ||| |||||||| | |||| | Sbjct 1254 CCTGGATCTGCGTAAGAACCACGGTAACGA--GCTGCACCGTGCGCGCGACTTGTTCTAC 1311 Query 8050 GGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 | ||||||||||||| ||||| |||| |||||| Sbjct 1312 GCCCTGTGGGTGCCCGACCTGTTCATGAAGCGCGT 1346 Score = 96.9 bits (106), Expect = 4e-15 Identities = 307/470 (65%), Gaps = 11/470 (2%) Strand=Plus/Plus Query 8501 TCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGAC 8560 ||||||| ||||| | || || | | || |||||| || |||||||| ||| | | Sbjct 1757 TCATTGACGTCAACTACTACCCGGTCGCGGAGGCGCGCAAGTCCAACATGCGTCACCGTC 1816 Query 8561 CCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACG 8620 | |||||| | ||||| || ||||| || ||||| ||| | | || | | | | | Sbjct 1817 CGGTTGGCATTGGCGTCCAGGGTCTTGCTGACGCCTTTATCCTCATGAACTACGCATTTG 1876 Query 8621 AAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCAT 8680 | ||| | | || || || |||| || || || ||| | || |||| | Sbjct 1877 AGAGCGAGCAGGCCCGTGAACTTAACAAGAACATTTTCGAGACGATCTACTACGCTTCGA 1936 Query 8681 T--AGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAG 8738 | ||| | || | || | ||| || ||||| ||||||| ||| | |||| Sbjct 1937 TGGAGACGTCAATGG--AAATCGCCAAGGAGCTGGGCCCGTACGAGACGTTCCAGGGCTC 1994 Query 8739 CCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTT---T 8795 ||||| ||| || || || || | |||||||||| || || || | ||| | Sbjct 1995 GCCTGCAAGCAAGGGCATCTTCCAGTTCGACATGTGGGGCGTGACTCCGTCTTCTGGCCT 2054 Query 8796 GTGGAATTGGAGCGATTTGAAACGCAAAAT-TGCTCAATT-CGGTTTGCGCAATTCGCTG 8853 ||| | ||| | | || | | ||| || |||| ||| ||||||| |||||| Sbjct 2055 TTGGGACTGGGCTGCACTCAA--GGAGAATGTGATCAAGCACGGCCTGCGCAACTCGCTG 2112 Query 8854 TTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTT 8913 | |||||| |||||||| || |||| || || || | || |||||||| ||| || Sbjct 2113 CTCGTGGCTCCTATGCCCACTGCTTCGACGGCCCAGATTCTCGGCAACAACGAGTCCATT 2172 Query 8914 GAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTT 8963 ||||||||||| |||| ||||| | || ||| |||||||||| || Sbjct 2173 GAGCCGTTCACGTCCAACATGTACAACCGCCGTGTGCTGGCCGGCGAGTT 2222 >seq14048 Length=3126 Score = 118 bits (130), Expect = 1e-21 Identities = 378/575 (66%), Gaps = 21/575 (4%) Strand=Plus/Plus Query 7522 GGCTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGC 7581 |||||| | || | | | |||||| || || ||| || || || ||| | ||||| Sbjct 781 GGCTACCTCTTCAGAGTGAACGGCAAAGTCGTGGAGCGCCCCCAGCAGATGATCATGCGC 840 Query 7582 GTGGCGGTGGGCATTCAC--GGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGA 7639 |||||| ||||||| ||| | || ||||| | || || || | |||||| | | | Sbjct 841 GTGGCGCTGGGCATCCACAAGACG--GACATCCAAGCGGCGCTGCAGACGTACGAGCTCA 898 Query 7640 TGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCG- 7698 |||| ||| || |||||||| ||||||| ||||| || || || |||| Sbjct 899 TGTCGCAGAAGTTCTTCACGCACGCGACGCCCACGCTGTTTAATGCAGGAAC-GCCGCGC 957 Query 7699 CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTAC 7758 || || |||| ||||| || ||||| |||||| || ||| ||| || ||||| ||| Sbjct 958 CCGCAGCTGTCGTCGTGCTTCTTGCTGGCCATGCAGGACGACTCCATTGAGGGCATCTAC 1017 Query 7759 AACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGG--TCTGAACG 7816 ||||||| | ||||| || ||||| | | || || || || || | | | Sbjct 1018 GACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCTGGAGGTATTGGCATCAGTATG 1077 Query 7817 TAAACGA--CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGG 7874 | | | ||||| | | ||| ||| |||| ||||||||| ||| || Sbjct 1078 CACAATATTCGTGC-CACGAAC---AGCTACATCCGCGGCACCAACGGCTCCTCCAATGG 1133 Query 7875 TTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGA-- 7932 | |||||| | | ||||| || || ||| || |||| |||||||| ||| Sbjct 1134 GATCATCCCCATGCTCAGAGTGTTTAACGACACGGCTCGCTATGTGGACCAGGGAGGAGG 1193 Query 7933 -AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGT 7991 || ||||| || | ||||| || |||||||||||||| || ||| | | || | Sbjct 1194 CAAACGCAAGGGATCGTTCGCCATTTACTTGGAGCCGTGGCATGCCGACGTGTTCGAGTT 1253 Query 7992 GCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCA--AAGCGCGCGATCTATTCTTC 8049 || |||||||| ||| ||| ||| | ||| |||||||| | |||| | Sbjct 1254 CCTGGATCTGCGTAAGAACCACGGTAACGA--GCTGCACCGTGCGCGCGACTTGTTCTAC 1311 Query 8050 GGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 | ||||||||||||| ||||| |||| |||||| Sbjct 1312 GCCCTGTGGGTGCCCGACCTGTTCATGAAGCGCGT 1346 Score = 96.9 bits (106), Expect = 4e-15 Identities = 307/470 (65%), Gaps = 11/470 (2%) Strand=Plus/Plus Query 8501 TCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGAC 8560 ||||||| ||||| | || || | | || |||||| || |||||||| ||| | | Sbjct 1757 TCATTGACGTCAACTACTACCCGGTCGCGGAGGCGCGCAAGTCCAACATGCGTCACCGTC 1816 Query 8561 CCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACG 8620 | |||||| | ||||| || ||||| || ||||| ||| | | || | | | | | Sbjct 1817 CGGTTGGCATTGGCGTCCAGGGTCTTGCTGACGCCTTTATCCTCATGAACTACGCATTTG 1876 Query 8621 AAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCAT 8680 | ||| | | || || || |||| || || || ||| | || |||| | Sbjct 1877 AGAGCGAGCAGGCCCGTGAACTTAACAAGAACATTTTCGAGACGATCTACTACGCTTCGA 1936 Query 8681 T--AGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAG 8738 | ||| | || | || | ||| || ||||| ||||||| ||| | |||| Sbjct 1937 TGGAGACGTCAATGG--AAATCGCCAAGGAGCTGGGCCCGTACGAGACGTTCCAGGGCTC 1994 Query 8739 CCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTT---T 8795 ||||| ||| || || || || | |||||||||| || || || | ||| | Sbjct 1995 GCCTGCAAGCAAGGGCATCTTCCAGTTCGACATGTGGGGCGTGACTCCGTCTTCTGGCCT 2054 Query 8796 GTGGAATTGGAGCGATTTGAAACGCAAAAT-TGCTCAATT-CGGTTTGCGCAATTCGCTG 8853 ||| | ||| | | || | | ||| || |||| ||| ||||||| |||||| Sbjct 2055 TTGGGACTGGGCTGCACTCAA--GGAGAATGTGATCAAGCACGGCCTGCGCAACTCGCTG 2112 Query 8854 TTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTT 8913 | |||||| |||||||| || |||| || || || | || |||||||| ||| || Sbjct 2113 CTCGTGGCTCCTATGCCCACTGCTTCGACGGCCCAGATTCTCGGCAACAACGAGTCCATT 2172 Query 8914 GAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTT 8963 ||||||||||| |||| ||||| | || ||| |||||||||| || Sbjct 2173 GAGCCGTTCACGTCCAACATGTACAACCGCCGTGTGCTGGCCGGCGAGTT 2222 >seq17350 Length=35721 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 6403 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6462 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || ||||| ||||| || || || || ||||| || ||||| || Sbjct 6463 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 6522 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| ||||||||| |||||||| || || ||||| || || || | || || || Sbjct 6523 -CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 6581 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 6582 AAGATCTGCAT 6592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505275000663160