Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq17656 111 1e-19 >seq17656 Length=11375 Score = 111 bits (122), Expect = 1e-19 Identities = 221/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 ||| || || | |||| ||||||||||| | || | | |||||| ||||||| Sbjct 1041 CCGCCGGATTGTTTTGTCTGCGTGGAACCCCGCCGATCTGAACGAGATGGCGCTGCCACC 982 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 ||||| |||| || ||||| ||||| | || || || || || || |||| || Sbjct 981 GTGTCACATGTTCTGCCAGTTCTACGTGGCGGACGGAGAGCTCTCCTGCCAGATGTACCA 922 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 | |||| ||||||||||| || || ||||| ||||| || || || || |||||||| Sbjct 921 GCGCTCAGCCGACATGGGACTCGGCGTGCCGTTCAACATTGCAAGCTACGCGCTGCTCAC 862 Query 41183 GTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGA 41242 | | | ||||| || || | ||||| |||||||| | ||| | | || || Sbjct 861 GCGGCTAGTGGCACAAGTGGCCGGGCTGAAACCAGGTGAATTCATCCACGTGATTGGTGA 802 Query 41243 TGGACATATTTACATTAATCACATAGAGCCGTTAACAGAA-CAACTGACACGAAAACCTA 41301 | ||| ||||| | || ||| | ||||| | ||||| || || || |||| || Sbjct 801 CGCGCATGTTTACCTGAACCACGTTGAGCC-TCTTCAGAAGCAGCTCACGCGAACCCCAC 743 Query 41302 GACCATTTCCAACGCTACTTATTAA 41326 | ||||| || ||||| | ||||| Sbjct 742 GGCCATTCCCGACGCTTCACATTAA 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397361382245665