Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq14049 194 2e-44 seq14048 194 2e-44 seq18936 91.5 2e-13 >seq14049 Length=3113 Score = 194 bits (214), Expect = 2e-44 Identities = 571/863 (66%), Gaps = 23/863 (3%) Strand=Plus/Minus Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 ||||| || | |||| ||||| ||| |||| ||| ||||||||||||||| | Sbjct 1589 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAAC 1530 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGC--GGC--TGG 111432 ||| |||||||| |||| | | || || || ||| || | || ||| || Sbjct 1529 GGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGGGCGTTGA 1472 Query 111433 TACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 | | ||| ||| ||||||||| ||||||||| ||| || | ||| |||||||| Sbjct 1471 TCGTCTTGCG--GGCACGTCCCTCCTTCTCGTACTTCTCGTACAGCGTTTCGAACTCCTC 1414 Query 111493 ACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCAC 111551 |||| | || | | ||||| | || || | || |||||||| | | ||| | ||| Sbjct 1413 ACCC-CAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACTCCACTTGCCAT 1355 Query 111552 CTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA- 111610 |||| || ||||||||||| ||||| || | |||||||| | || | || | Sbjct 1354 TGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAACAAGTCGCGCG 1295 Query 111611 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 111670 ||| | || || ||| ||| ||||| || | || |||||||| | | || || Sbjct 1294 CACGGTGCAGCT-CGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCA 1236 Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGCCCAGCT---TGATTTACA 111727 ||||| ||||| | || | |||| |||||||| || || || || | ||| Sbjct 1235 TGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTCCCTGGTCCACA 1176 Query 111728 TAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTT 111787 ||||| || ||| ||||||| || | ||||| || || || |||| || || || Sbjct 1175 TAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGGAGGAGCCGTTG 1116 Query 111788 GTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 || || || || || | || |||| | | || || || || |||||||| || Sbjct 1115 GTGCCGCGGATGT-AGCTGTTCGTGGCACGAATATTGTGCATACTGATGCCAATACCTCC 1057 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 ||||||||| ||||| ||| |||| | | || || | ||||| || | || ||||| Sbjct 1056 AGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTC 997 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 |||| |||| | | |||||| |||| |||||| | || || || ||||| || Sbjct 996 GTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGTTCCTGCATTAAA 937 Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGA 112025 || || || || ||||| |||| | || | || ||||| ||||| |||| || Sbjct 936 CAGCGTGGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTGCAGCG 878 Query 112026 CAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGG 112085 | | | ||||| | ||||||||| | || || ||||||| ||| | ||| ||| Sbjct 877 CCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCATCTGCTGGGGGC 818 Query 112086 TTTCCATGAGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACC 112143 |||| || |||| | | | |||||| |||| | |||| | || |||| || Sbjct 817 GCTCCACGACTTTGCCGTTCA--CTCTGAAGAGGTAGCCCCTCTCCAACGTCTTGAAGCC 760 Query 112144 AAAGTAACCAAAATCATAGTCCC 112166 |||||| | | ||| |||||| Sbjct 759 AAAGTAGTCGTATTCAAAGTCCC 737 >seq14048 Length=3126 Score = 194 bits (214), Expect = 2e-44 Identities = 571/863 (66%), Gaps = 23/863 (3%) Strand=Plus/Minus Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 ||||| || | |||| ||||| ||| |||| ||| ||||||||||||||| | Sbjct 1589 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAAC 1530 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGC--GGC--TGG 111432 ||| |||||||| |||| | | || || || ||| || | || ||| || Sbjct 1529 GGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGGGCGTTGA 1472 Query 111433 TACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 | | ||| ||| ||||||||| ||||||||| ||| || | ||| |||||||| Sbjct 1471 TCGTCTTGCG--GGCACGTCCCTCCTTCTCGTACTTCTCGTACAGCGTTTCGAACTCCTC 1414 Query 111493 ACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCAC 111551 |||| | || | | ||||| | || || | || |||||||| | | ||| | ||| Sbjct 1413 ACCC-CAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACTCCACTTGCCAT 1355 Query 111552 CTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA- 111610 |||| || ||||||||||| ||||| || | |||||||| | || | || | Sbjct 1354 TGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAACAAGTCGCGCG 1295 Query 111611 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 111670 ||| | || || ||| ||| ||||| || | || |||||||| | | || || Sbjct 1294 CACGGTGCAGCT-CGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCA 1236 Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGCCCAGCT---TGATTTACA 111727 ||||| ||||| | || | |||| |||||||| || || || || | ||| Sbjct 1235 TGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTCCCTGGTCCACA 1176 Query 111728 TAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTT 111787 ||||| || ||| ||||||| || | ||||| || || || |||| || || || Sbjct 1175 TAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGGAGGAGCCGTTG 1116 Query 111788 GTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 || || || || || | || |||| | | || || || || |||||||| || Sbjct 1115 GTGCCGCGGATGT-AGCTGTTCGTGGCACGAATATTGTGCATACTGATGCCAATACCTCC 1057 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 ||||||||| ||||| ||| |||| | | || || | ||||| || | || ||||| Sbjct 1056 AGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTC 997 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 |||| |||| | | |||||| |||| |||||| | || || || ||||| || Sbjct 996 GTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGTTCCTGCATTAAA 937 Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGA 112025 || || || || ||||| |||| | || | || ||||| ||||| |||| || Sbjct 936 CAGCGTGGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTGCAGCG 878 Query 112026 CAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGG 112085 | | | ||||| | ||||||||| | || || ||||||| ||| | ||| ||| Sbjct 877 CCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCATGATCATCTGCTGGGGGC 818 Query 112086 TTTCCATGAGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACC 112143 |||| || |||| | | | |||||| |||| | |||| | || |||| || Sbjct 817 GCTCCACGACTTTGCCGTTCA--CTCTGAAGAGGTAGCCCCTCTCCAACGTCTTGAAGCC 760 Query 112144 AAAGTAACCAAAATCATAGTCCC 112166 |||||| | | ||| |||||| Sbjct 759 AAAGTAGTCGTATTCAAAGTCCC 737 >seq18936 Length=24579 Score = 91.5 bits (100), Expect = 2e-13 Identities = 284/427 (67%), Gaps = 22/427 (5%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCC----ATCAAGGCTAATGTTTTC 122426 || || || || |||||||| || ||||||||||| || ||| || | |||| | Sbjct 21280 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGCATCGAGA-TCATGT---C 21225 Query 122427 CATAAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGA 122485 ||| |||| || || |||||| |||| | || | ||| |||| | || || | Sbjct 21224 CATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACCCAGCGAGTAC-AGCA 21166 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 | || || | ||| |||| ||||||| | |||| | | || ||||| |||||||| | Sbjct 21165 GGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAATTCATGCCGATGAGCT 21106 Query 122546 TACATGGG-AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 || ||| || | ||| | |||| | | ||| ||| | || || || |||||| Sbjct 21105 C-CACGGGCAGCGAGTCGCGCACGAACTCGTGCTCGATCGCCACGGCGTCACGCACGATC 21047 Query 122605 GCGTGGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC-CACGG 122659 |||| | | ||| || || | || || || | | ||| |||| Sbjct 21046 TCGTGCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAGCTTCGAGTACAGCAGGCACG- 20992 Query 122660 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTG 122719 | || ||| ||| | |||||||| || || ||||| || ||||||| || || | Sbjct 20991 CGAAGTCCGTGTGCATGCCCTCATCACGACTGATGAGTTCGTTCGAGAAGCTCAGGCCAG 20932 Query 122720 GCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATAC 122779 |||||||||| |||||||| | ||| | |||| |||||| || || |||||||| || | Sbjct 20931 GCATGAGACCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAAATGC 20872 Query 122780 CCTCCAC 122786 |||| || Sbjct 20871 CCTCTAC 20865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627878658136800