Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq14049 190 3e-43 seq14048 190 3e-43 seq18936 145 9e-30 >seq14049 Length=3113 Score = 190 bits (210), Expect = 3e-43 Identities = 945/1481 (64%), Gaps = 44/1481 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || |||| |||| | ||||||| | |||| ||||| || | || ||||| || || Sbjct 2195 TACATGTTGGACGTGAACGGCTCAATGGACTCGTTGTTGCCGAGAATCTGGGCCGTCGAA 2136 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTT 118299 || |||||||| || |||| ||| || ||| || || || | || | || | | Sbjct 2135 GCAGTGGGCATAGGAGCCACGAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACATTC--T 2078 Query 118300 CCTTGAGAGCGTCCCAGTCGTAGTTG-----AG-CTTTGTCTCCCCCTGCCACATATCAA 118353 ||||||| || ||||||| | | || | ||| | ||| ||||| || | Sbjct 2077 CCTTGAGTGCAGCCCAGTCCCAAAGGCCAGAAGACGGAGTCACGCCC---CACATGTCGA 2021 Query 118354 ACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT 118413 |||||| ||| || | | || ||||| |||| || ||||| || |||||| ||| Sbjct 2020 ACTGGAAGATGCCCTTGCTTGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCTCCT 1961 Query 118414 CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCAT 118473 || | ||| || ||| | | |||| || || || || |||||| | Sbjct 1960 TGGCGATTTCCATTGACGTCTCCATCGAAGCGTAGTAGATCGTCTCGAAAATGTTCTTGT 1901 Query 118474 TCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGC 118531 | | | | ||||| ||| ||||| ||| ||| || | ||||| | || || Sbjct 1900 TAAGTTCACGGGCCTGCTCGCTCTCAAATGCGTAGTT--CATGAGGATAAAGGCGTCAGC 1843 Query 118532 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC 118591 ||||| ||||| || | ||||| || || || | ||| || ||||| || || | | Sbjct 1842 AAGACCCTGGACGCCAATGCCAACCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCGC 1783 Query 118592 CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGAT 118651 || || || | || || || ||| | || || || ||||| ||||| || | Sbjct 1782 GACCGGGTAGTAGTTGACGTCAATGACCTTGTTCAGGTTACGAGTGACCACCTTGGTCAC 1723 Query 118652 TTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGC 118711 || | || || | ||| | || || | ||| | || |||| || ||||| Sbjct 1722 CTCGTACAGTTTCTGGTAGTTGAACACGCCATCCTCCAC---GA---ACTTGGGCAGGGC 1669 Query 118712 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA-GTGTACTCTATAATTTCCG 118770 | || ||||| || ||||| | ||| || | | | |||||||| || | || Sbjct 1668 CACAGAGGCCAGGTTGCACACCGCCACCTCGTC-TGGTGACGTGTACTCCATCACCTCAC 1610 Query 118771 TGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 118830 ||||||||| | || ||||| | ||||| || || ||||| ||| || Sbjct 1609 AGCACAAGTTGCTAGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCG 1550 Query 118831 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 118890 | |||||||| |||||| | ||| |||||||| | || | | || || || || Sbjct 1549 CGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACC 1490 Query 118891 AGACATCGGCAGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTG 118946 | || | || | ||| | | | ||| || || ||||| | ||||||||| | Sbjct 1489 A--CAGCTGCTG--GGCGTTGATCGTCTTGCGGGCACGTCCCTCCTTCTCGTACTTCTCG 1434 Query 118947 TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAG 119006 || || | ||| ||||| |||||| | || |||| | || || | | || ||| Sbjct 1433 TACAGCGTTTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAG 1374 Query 119007 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 119066 || | | ||| | ||| |||| || ||||||||||| ||||| || | ||| || Sbjct 1373 AACAAACTCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGG 1314 Query 119067 GCCGAGAAGAGATCCCG-ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 119125 || |||| | || || || | || | || | || || || ||||| |||| Sbjct 1313 GCGTAGAACAAGTCGCGCGCACGGTGCAGC-TCGTTACCGTGGTTCTTACGCAGATCCAG 1255 Query 119126 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG--- 119182 || || | | || || |||||||| |||| ||| | |||| || ||||| || Sbjct 1254 GAACTCGAACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTT 1195 Query 119183 ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 | || |||||| ||||| | || ||| ||||||| || | ||||| || ||||| Sbjct 1194 GCCTCCTCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGAT 1135 Query 119243 ACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGAT 119302 |||| ||| ||| || || || || || || |||| | | || ||| || Sbjct 1134 CCCATTGGAGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCAT 1075 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 || |||||||| || |||||||| ||||| |||||||| | |||| || |||| Sbjct 1074 ACTGATGCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTA 1015 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422 ||| || || || ||||| ||| | || | | |||||| ||||| || || | Sbjct 1014 GATGCCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCG 955 Query 119423 GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 119481 || || || || || || || || || |||||||| |||| | || | || ||||| Sbjct 954 CGGCGTTCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGA 896 Query 119482 TGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 119541 ||||| |||| || | || | ||||| | ||| || || | || || |||| Sbjct 895 GCTCGTACGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCA 836 Query 119542 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTG--GAGGTAACTCTT 119599 | | ||| | ||||| |||| | | || | | ||||| |||||| | | | Sbjct 835 TGATCATCTGCTGGGGGCGCTCCACGACTTTGCCGTTCA--CTCTGAAGAGGTAGCCCCT 778 Query 119600 CTCCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGTCCC 119640 |||||| ||||||| ||||| ||| | | || |||||| Sbjct 777 CTCCAACGTCTTGAAGCCAAAGTAGTCGTATTCAAAGTCCC 737 >seq14048 Length=3126 Score = 190 bits (210), Expect = 3e-43 Identities = 945/1481 (64%), Gaps = 44/1481 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || |||| |||| | ||||||| | |||| ||||| || | || ||||| || || Sbjct 2195 TACATGTTGGACGTGAACGGCTCAATGGACTCGTTGTTGCCGAGAATCTGGGCCGTCGAA 2136 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTT 118299 || |||||||| || |||| ||| || ||| || || || | || | || | | Sbjct 2135 GCAGTGGGCATAGGAGCCACGAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACATTC--T 2078 Query 118300 CCTTGAGAGCGTCCCAGTCGTAGTTG-----AG-CTTTGTCTCCCCCTGCCACATATCAA 118353 ||||||| || ||||||| | | || | ||| | ||| ||||| || | Sbjct 2077 CCTTGAGTGCAGCCCAGTCCCAAAGGCCAGAAGACGGAGTCACGCCC---CACATGTCGA 2021 Query 118354 ACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT 118413 |||||| ||| || | | || ||||| |||| || ||||| || |||||| ||| Sbjct 2020 ACTGGAAGATGCCCTTGCTTGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCTCCT 1961 Query 118414 CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCAT 118473 || | ||| || ||| | | |||| || || || || |||||| | Sbjct 1960 TGGCGATTTCCATTGACGTCTCCATCGAAGCGTAGTAGATCGTCTCGAAAATGTTCTTGT 1901 Query 118474 TCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGC 118531 | | | | ||||| ||| ||||| ||| ||| || | ||||| | || || Sbjct 1900 TAAGTTCACGGGCCTGCTCGCTCTCAAATGCGTAGTT--CATGAGGATAAAGGCGTCAGC 1843 Query 118532 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC 118591 ||||| ||||| || | ||||| || || || | ||| || ||||| || || | | Sbjct 1842 AAGACCCTGGACGCCAATGCCAACCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCGC 1783 Query 118592 CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGAT 118651 || || || | || || || ||| | || || || ||||| ||||| || | Sbjct 1782 GACCGGGTAGTAGTTGACGTCAATGACCTTGTTCAGGTTACGAGTGACCACCTTGGTCAC 1723 Query 118652 TTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGC 118711 || | || || | ||| | || || | ||| | || |||| || ||||| Sbjct 1722 CTCGTACAGTTTCTGGTAGTTGAACACGCCATCCTCCAC---GA---ACTTGGGCAGGGC 1669 Query 118712 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA-GTGTACTCTATAATTTCCG 118770 | || ||||| || ||||| | ||| || | | | |||||||| || | || Sbjct 1668 CACAGAGGCCAGGTTGCACACCGCCACCTCGTC-TGGTGACGTGTACTCCATCACCTCAC 1610 Query 118771 TGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 118830 ||||||||| | || ||||| | ||||| || || ||||| ||| || Sbjct 1609 AGCACAAGTTGCTAGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCG 1550 Query 118831 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 118890 | |||||||| |||||| | ||| |||||||| | || | | || || || || Sbjct 1549 CGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACC 1490 Query 118891 AGACATCGGCAGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTG 118946 | || | || | ||| | | | ||| || || ||||| | ||||||||| | Sbjct 1489 A--CAGCTGCTG--GGCGTTGATCGTCTTGCGGGCACGTCCCTCCTTCTCGTACTTCTCG 1434 Query 118947 TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAG 119006 || || | ||| ||||| |||||| | || |||| | || || | | || ||| Sbjct 1433 TACAGCGTTTCGAACTCCTCACCCCAGCACTTGTAGAGATCAGGAGCTTCGTTCGGACAG 1374 Query 119007 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 119066 || | | ||| | ||| |||| || ||||||||||| ||||| || | ||| || Sbjct 1373 AACAAACTCCACTTGCCATTGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGG 1314 Query 119067 GCCGAGAAGAGATCCCG-ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 119125 || |||| | || || || | || | || | || || || ||||| |||| Sbjct 1313 GCGTAGAACAAGTCGCGCGCACGGTGCAGC-TCGTTACCGTGGTTCTTACGCAGATCCAG 1255 Query 119126 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG--- 119182 || || | | || || |||||||| |||| ||| | |||| || ||||| || Sbjct 1254 GAACTCGAACACGTCGGCATGCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTT 1195 Query 119183 ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 | || |||||| ||||| | || ||| ||||||| || | ||||| || ||||| Sbjct 1194 GCCTCCTCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGAT 1135 Query 119243 ACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGAT 119302 |||| ||| ||| || || || || || || |||| | | || ||| || Sbjct 1134 CCCATTGGAGGAGCCGTTGGTGCCGCGGATGTAGCTGTTCGTGGCACGAATATTGTGCAT 1075 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 || |||||||| || |||||||| ||||| |||||||| | |||| || |||| Sbjct 1074 ACTGATGCCAATACCTCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTA 1015 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422 ||| || || || ||||| ||| | || | | |||||| ||||| || || | Sbjct 1014 GATGCCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCG 955 Query 119423 GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 119481 || || || || || || || || || |||||||| |||| | || | || ||||| Sbjct 954 CGGCGTTCCTGCATTAAACAGCGTGGGCGTCGCGTGCGTGAAGA-ACTTCTGCGACATGA 896 Query 119482 TGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 119541 ||||| |||| || | || | ||||| | ||| || || | || || |||| Sbjct 895 GCTCGTACGTCTGCAGCGCCGCTTGGATGTCCGTCTTGTGGATGCCCAGCGCCACGCGCA 836 Query 119542 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTG--GAGGTAACTCTT 119599 | | ||| | ||||| |||| | | || | | ||||| |||||| | | | Sbjct 835 TGATCATCTGCTGGGGGCGCTCCACGACTTTGCCGTTCA--CTCTGAAGAGGTAGCCCCT 778 Query 119600 CTCCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGTCCC 119640 |||||| ||||||| ||||| ||| | | || |||||| Sbjct 777 CTCCAACGTCTTGAAGCCAAAGTAGTCGTATTCAAAGTCCC 737 >seq18936 Length=24579 Score = 145 bits (160), Expect = 9e-30 Identities = 304/445 (68%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | || ||| | ||||| Sbjct 21280 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGCATCGAGATCATGTCCATC 21221 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || |||||||| ||| | || | ||| || | | | || || || Sbjct 21220 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACCCAGCGAGTACAGCAGGCGG 21161 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | ||| |||| ||||||| |||| | | || ||||| |||||||| | || Sbjct 21160 TCGGCCACGAACTCGATGTACTGGCACATGAGCGCCGAATTCATGCCGATGAGCTC-CAC 21102 Query 129908 GGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||| |||| ||| | |||| | | ||| || |||| || || |||||||| |||| Sbjct 21101 GGGCAGCGAGTCGCGCACGAACTCGTGCTCGATCGCCACGGCGTCACGCACGATCTCGTG 21042 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACTCC 130024 | | | ||| | ||| | | || || || | | || |||| | || ||| Sbjct 21041 CACGCGGCTCTCCGGCAGCT-TGTTCACCAGCTTCGAGTACAGCAGGCACG-CGAAGTCC 20984 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 ||| | ||||| ||||| ||||||||| |||||||||| ||| || ||||||||| Sbjct 20983 GTGTGCATGCCCTCATCACGACTGATGAGTTCGTTCGAGAAGCTCAGGCCAGGCATGAGA 20924 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || |||||||| | |||||| || | || || ||||| |||||||| || ||||| || Sbjct 20923 CCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAAATGCCCTCTACC 20864 Query 130145 CACGCGAACGCAAAGAGACGCTCAG 130169 |||||||| | |||||||||| Sbjct 20863 GCGGCGAACGCCAGCAGACGCTCAG 20839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618284201315480