Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq14049 183 4e-41 seq14048 183 4e-41 seq18936 105 8e-18 >seq14049 Length=3113 Score = 183 bits (202), Expect = 4e-41 Identities = 435/646 (67%), Gaps = 11/646 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||||||||| | || || || | ||||| | | | Sbjct 819 CCCCCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGACGGACATCCAAGCGGC 878 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 || |||| ||||| ||||| || | || | |||| ||||| || || || || | Sbjct 879 GCTGCAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCGACGCCCACGCTGT 937 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 | ||||| || || || | || || |||| |||||| | | |||| |||| | Sbjct 938 TTAATGCAGGAACGCCGCGCCCGCAGCTGTCGTCGTGCTTCTTGCTGGCCATGCAGGACG 997 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| || | || ||||| | || || | | |||| ||| ||||| |||||||||| Sbjct 998 ACTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCTG 1057 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACA 104518 | |||||||| || || || || | | |||| || | || || || || || Sbjct 1058 GAGGTATTGGCATCAGTATGCACAATATTCGTGCCACGAACAGCTAC-ATCCGCGGCACC 1116 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || || |||| || || || ||||| | || ||||||| ||| || |||||| Sbjct 1117 AACGGCTCCTCCAATGGGATCATCCCCATGCTCAGAGTGTTTAACGACACGGCTCGCTAT 1176 Query 104579 GTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || | || | || | || |||||||| |||| | || | ||||| ||||| Sbjct 1177 GTGGACCAGGGAGGAGGCAAACGCAAGGGATCGTTCGCCATTTACTTGGAGCCGTGGCAT 1236 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || || | | |||||||| || ||||| ||||| ||| ||||| | | | |||| Sbjct 1237 GCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAACGAGCTG-CACCGTGC 1295 Query 104696 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||||| | |||| ||| || ||| | || || || ||||||||| | || |||| | Sbjct 1296 GCGCGACTTGTTCTACGCCCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTCGAGGCCAA 1355 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTG 104813 |||||| ||| | | || ||||| || | || |||| ||||| | | ||| | ||||| Sbjct 1356 TGGCAAGTGGAGTTTGTTCTGTCCGAACGAAGCTCCTGATCTCTACAAGTGCTG-GGGTG 1414 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGC 104859 ||||||| ||| | || ||| ||||||||| | || || || || Sbjct 1415 AGGAGTTCGAAACGCTGTACGAGAAGTACGAGAAGGAGGGACGTGC 1460 >seq14048 Length=3126 Score = 183 bits (202), Expect = 4e-41 Identities = 435/646 (67%), Gaps = 11/646 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||||||||| | || || || | ||||| | | | Sbjct 819 CCCCCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGACGGACATCCAAGCGGC 878 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 || |||| ||||| ||||| || | || | |||| ||||| || || || || | Sbjct 879 GCTGCAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCGACGCCCACGCTGT 937 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 | ||||| || || || | || || |||| |||||| | | |||| |||| | Sbjct 938 TTAATGCAGGAACGCCGCGCCCGCAGCTGTCGTCGTGCTTCTTGCTGGCCATGCAGGACG 997 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| || | || ||||| | || || | | |||| ||| ||||| |||||||||| Sbjct 998 ACTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCTG 1057 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACA 104518 | |||||||| || || || || | | |||| || | || || || || || Sbjct 1058 GAGGTATTGGCATCAGTATGCACAATATTCGTGCCACGAACAGCTAC-ATCCGCGGCACC 1116 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || || |||| || || || ||||| | || ||||||| ||| || |||||| Sbjct 1117 AACGGCTCCTCCAATGGGATCATCCCCATGCTCAGAGTGTTTAACGACACGGCTCGCTAT 1176 Query 104579 GTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || | || | || | || |||||||| |||| | || | ||||| ||||| Sbjct 1177 GTGGACCAGGGAGGAGGCAAACGCAAGGGATCGTTCGCCATTTACTTGGAGCCGTGGCAT 1236 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || || | | |||||||| || ||||| ||||| ||| ||||| | | | |||| Sbjct 1237 GCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAACGAGCTG-CACCGTGC 1295 Query 104696 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||||| | |||| ||| || ||| | || || || ||||||||| | || |||| | Sbjct 1296 GCGCGACTTGTTCTACGCCCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTCGAGGCCAA 1355 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTG 104813 |||||| ||| | | || ||||| || | || |||| ||||| | | ||| | ||||| Sbjct 1356 TGGCAAGTGGAGTTTGTTCTGTCCGAACGAAGCTCCTGATCTCTACAAGTGCTG-GGGTG 1414 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGC 104859 ||||||| ||| | || ||| ||||||||| | || || || || Sbjct 1415 AGGAGTTCGAAACGCTGTACGAGAAGTACGAGAAGGAGGGACGTGC 1460 >seq18936 Length=24579 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94802 CTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG 94861 ||||||| || | || || || || ||||| || |||||||| || || |||||| Sbjct 20839 CTGAGCGTCTGCTGGCGTTCGCCGCGGTAGAGGGCATTTTCTTCTCGGGCTCGTTCTGCT 20898 Query 94862 CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTA 94921 |||| | |||||||||||||| ||||||||||| || || ||||||| ||||| || | Sbjct 20899 CTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTGAGCTTCTCGAACGAACTCA 20958 Query 94922 TCTCTCGTGACGAGGG 94937 || |||||| ||||| Sbjct 20959 TCAGTCGTGATGAGGG 20974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583118389584920