Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq19255 262 1e-64 seq16433 91.5 4e-13 seq7856 91.5 4e-13 seq10647 89.7 2e-12 seq16945 87.8 5e-12 seq18863 86.0 2e-11 >seq19255 Length=18641 Score = 262 bits (290), Expect = 1e-64 Identities = 955/1478 (65%), Gaps = 30/1478 (2%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || |||||| | || || || || || ||||||| || ||||| ||||| || || || Sbjct 7230 GGGATCGATCTTGGCACGACGTACTCGTGTGTTGGAGTGTGGCAGAATGACCGCGTGGAG 7171 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||| || || ||| | || ||||| || ||||| || || || || | Sbjct 7170 ATCATCGCCAATGACCAGGGGAACCGCACGACGCCGTCTTACGTGGCGTTCACGGATTCG 7111 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 || || |||| ||||| | || || || |||| ||| || || | |||||||| Sbjct 7110 GAACGGTTGATCGGTGACGCCGCCAAGAACCAAGTGGCTATGAACGCACACAATACGGTG 7051 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACA---CAATCTGAT 349441 || |||| || || | || || | | ||| | ||| || | || | || Sbjct 7050 TTCGATGTCAAACGGTTGATCGGCCGCAAGTTTACCGACC---CTGAAGTGCAGGCGGAC 6994 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || | || || | || || | || | || || | | ||| Sbjct 6993 ATGAAGCACTGGCCGTTCAAAGTGACTCGAGGCTCCGAGAACAAGCCCCAAGTGGTGGTG 6934 Query 349502 GAATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560 | | ||||||||| | || || || ||||| || || || || ||||| | | Sbjct 6933 CAGTTTAAAGGTGAGTCCAAGACG-TTCCAGCCCGAGGAGATATCGTCCATGGTGCTGAT 6875 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||| || || ||||| || | | | || | ||| | | || || | || Sbjct 6874 CAAGATGCGCGAGATCGCTGAGGCTTTTATTGGCAAGCAAGTGAAGAACGCAGTGGTGAC 6815 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || || ||||| ||||| | || || ||||||||||| |||||| |||||| Sbjct 6814 GGTGCCCGCGTATTTCAATGACTCGCAACGCCAAGCAACAAAAGACGCTGGCGCCATTGC 6755 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || || ||||| || | || || || ||||||||||| || |||||||| || || | Sbjct 6754 TGGTTTGAATGTGCTGCGTATTATCAACGAACCCACTGCCGCTGCAATTGCCTACGGTTT 6695 Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 || || | | ||| ||| | ||| | | || |||||| | ||||| || || || Sbjct 6694 GGACAAGAAGGGTG---GAGAGCACAATGTGTTGATCTTTGATCTCGGTGGAGGAACATT 6638 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 || || || || || || ||||||| || ||||| || || || || || || ||||| Sbjct 6637 CGACGTCTCGCTTCTCACTATTGAAGACGGTATTTTCGAGGTGAAGGCGACGGCAGGTGA 6578 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATT 349920 || ||||| || || ||||| ||||| || |||||||| | |||| || || || Sbjct 6577 CACGCATCTGGGCGGTGAAGACTTTGACAACCGTCTCGTCGAGTATTTCGTGCTGGAGTT 6518 Query 349921 TAAG--CGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGA 349978 |||| || | ||| || || | || | | || ||||| ||||| | Sbjct 6517 TAAGAAGAAGAACCGCAAAGACTTAACGGGG--AACTCACGCGCGATGCGGCGCCTTCGT 6460 Query 349979 ACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATT 350038 || || || || ||||| |||||| | || || || || | ||| | | || || || Sbjct 6459 ACGGCATGCGAGCGTGCGAAGCGTACGTTGTCGACTTCTGCTCAAGCGTACATCGAGATC 6400 Query 350039 GATTCTCTTGC-TGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 ||||| |||| ||| |||| |||||| || | ||||| |||||||||||||| || Sbjct 6399 GATTC-GTTGCTTGACGGCATTGATTTCAACTCGACCATTACGCGTGCTCGGTTTGAGGA 6341 Query 350098 ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGC 350157 || || | || | ||| | || ||||| || |||| | || | || | Sbjct 6340 TTTGTGCAGCGACTTCTTTCGCAAGACGATGGACCCGGTGGCGCAGGTTCTGCGCGACTC 6281 Query 350158 AAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCC 350217 ||| |||| ||| || | | || || || | || || || || || ||||| || Sbjct 6280 TAAACTGTCGAAAGGACAAGTGAACGAGGTGGTGCTGGTCGGGGGATCGACTCGTATCCC 6221 Query 350218 AAAAGTTCAAC-AGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATT 350275 || || |||| | || ||| || || || || ||||| || | ||| || || || Sbjct 6220 TAAGGTGCAACAACTTTTGATC-GATTTCTTCAACGGCAAGGAGCTGTTCAAG-TCGATC 6163 Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAAT 350335 || || || ||||| || || ||||||||| | || ||||| | || || || | Sbjct 6162 AACCCCGACGAAGCAGTCGCGTATGGTGCTACCGTGCAGGCGGCCATCCTAAGCGG---T 6106 Query 350336 AAGAGTTC-----TAAAATTG-ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTT 350389 | |||| || ||| | ||||| | ||||| ||||| | ||| | || ||| Sbjct 6105 CACGGTTCGTCGTCGAAGTTGCAAGATCTGCTGCTACTGGATGTGGCCCCATTGTCTCTT 6046 Query 350390 GGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCT 350449 ||||| || ||| | |||| || ||||| || ||||| | || | ||| || ||| Sbjct 6045 GGATTGGAGACTGCAGGTGGGGTGATGACCAAGCTCATTCCACGTAACACTACGGTTCCT 5986 Query 350450 ACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAA 350509 | |||||| | || || || || || | || || ||||| | | || || ||| Sbjct 5985 GCGAAAAAGACGCAGACGTTCTCGACCTACGCCGACAATCAAGCGGGTGTGTTGATCCAA 5926 Query 350510 GTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTA 350569 || || |||||||| || || ||| | || || || || || | || | ||| Sbjct 5925 GTGTTCGAAGGTGAGCGCTCTATGACTTACGACAACCATCTTCTGGGCAAGTTCAACCTG 5866 Query 350570 AGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGAT 350629 | || || || |||||| | || || || || ||||| ||| | ||||| | ||| Sbjct 5865 GACGGGATCCCGCCCATGCCTCGCGGTGTGCCGCAAATTGACGTCACGTTCGACGTGGAT 5806 Query 350630 TCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 | ||||| ||||| || || | ||||| || || || Sbjct 5805 GCCAATGGCATTTTGAACGTCTCTGCAGTGGAGAAGTC 5768 >seq16433 Length=11064 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 10628 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 10687 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 10688 CCCTGCTTCTCCA 10700 >seq7856 Length=950 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 308 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 249 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 248 CCCTGCTTCTCCA 236 >seq10647 Length=2219 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 98 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 39 Query 74548 TCGGGCA 74554 ||||||| Sbjct 38 TCGGGCA 32 >seq16945 Length=10829 Score = 87.8 bits (96), Expect = 5e-12 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 130707 TCCCCAGCACATTCATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCT 130766 ||||| ||| || || || |||| | ||||||||| ||||| |||||||||||||| Sbjct 1975 TCCCCTCCACTCTCGTCGTGGCCAGCGAGCATTCCTCCCAGCATGACAAAATCAGCTCCA 2034 Query 130767 GCTCCAAATGCTTTCGCAATATCCCCGGGAGATTTACAACCCCCATCAGCAATAACATGT 130826 || || || || || || | || ||||| | | || || || || | || || || Sbjct 2035 GCACCGAAAGCCTTGGCCACGTCGCCGGGGCACGTGCATCCTCCGTCCGAGATGACGTGG 2094 Query 130827 CCATTTAATCCATGTGCCGCATCAGCACACTCTGAAATAGCAGAAAGTTGTGGATATCCA 130886 || || | || || || || || |||||||| | ||||| || || || || || Sbjct 2095 CCGTTGAGACCGTGCGCAGCGTCGGCACACTCCAGCACTGCAGACAGCTGCGGGTACCCC 2154 Query 130887 ACTCCAGTTACTTTTCTTGTAGTACAAACAGCACCTGGACCAATACCAATTTTAACAATA 130946 || || || || | || || || |||| || |||||||| || | || | || Sbjct 2155 ACGCCCGTCTGCTTGCGGGTGGTGCACACAGAGCCCGGACCAATGCCGACCTTGATGATG 2214 Query 130947 TCAGCTCC 130954 |||||||| Sbjct 2215 TCAGCTCC 2222 >seq18863 Length=39129 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||||| | ||||||||||||| |||| |||||| || | | ||||| || || Sbjct 25631 ATTTCTTTCAGGCGTGGCACACCAAGTGTCACATTC---TTCGCGGACACACCGGCGTAG 25687 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 ||||| || || || || | || || | ||||||||||| |||||||| | | ||| Sbjct 25688 TGGAATGTGTTCAGCGTCATCTGCGTCGCCGGCTCACCAATGGACTGCGCACCCACAACA 25747 Query 377566 CCAACCATTTCTCCAG 377581 ||| ||||||| |||| Sbjct 25748 CCAGCCATTTCACCAG 25763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514875182489999