Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq17656 237 1e-57 seq17300 102 7e-17 >seq17656 Length=11375 Score = 237 bits (262), Expect = 1e-57 Identities = 461/677 (68%), Gaps = 13/677 (2%) Strand=Plus/Plus Query 29863 GAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTG 29922 |||||| ||| || || || |||| | |||||| || || ||||| || | ||| Sbjct 756 GAGCTGCTTCTGAAGAGGCTCAACGTGGTTCAGGTAAACATGCGCGTCACCAATCACGTG 815 Query 29923 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29982 || || || || |||| ||||||| || || |||| | |||||| || | ||| Sbjct 816 GATGAATTCACCTGGTTTCAGCCCGGCCACTTGTGCCACTAGCCGCGTGAGCAGCGCGTA 875 Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 ||| || ||||| || || || ||||| |||||||| | || | |||||| | ||| || Sbjct 876 GCTTGCAATGTTGAACGGCACGCCGAGTCCCATGTCGGCTGAGCGCTGGTACATCTGGCA 935 Query 30043 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 |||||||||||||| |||||| ||||| || | ||| ||||| || || ||||| Sbjct 936 GGAGAGCTCTCCGTCCGCCACGTAGAACTGGCAGAACATGTGACACGGTGGCAGCGCCAT 995 Query 30103 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 30162 | || || ||||||||| || ||| | || || | ||| |||||| | Sbjct 996 CTCGTTCAGATCGGCGGGGTTCCACGCAGACAAAACAATCCGGCGGTCGGTCGGGTTGGT 1055 Query 30163 CCTGA---TGAGGTCCACGGCGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTG 30218 || | || | ||| | ||| | || ||||| ||| || | |||||| | Sbjct 1056 CCGCAGCTTGTGAATCACCTCA----GCAAGTTGGTCCACACCCTGTCCAGTGTAGTCCG 1111 Query 30219 CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30278 | ||||||||| |||| ||||| || || | ||||||||| ||||| |||||||| | Sbjct 1112 CATGCATGTCCGTATACTTGGCTCCAAAGTGGCGCCACTGGAAGCCGTAGACCGGTCCAA 1171 Query 30279 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30338 |||| ||| |||||| || || || | |||||||| | |||| || || || Sbjct 1172 GGTCGCCCACTTCCCGCGATTCCAACCCTCGACTGTCCAAATACTCTCGAGATCCATTTC 1231 Query 30339 CGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 30398 |||||||||| | | |||||| ||| | | || ||| || || |||| Sbjct 1232 CGTCCCAGATGTGGATATCCTTCTGCTGCAGCGTGTGCGCATTCGTGTCGCCACTAACGA 1291 Query 30399 ACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 |||||||||||||||| | || | ||| ||||| | |||||||||||| || || | Sbjct 1292 ACCACAGCAGCTCCTCGGCCACACCGCGCCAGAAGACGCGCTTGGTCGTGAGCAGCGGGA 1351 Query 30459 AC----TGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCGTG 30514 || |||||| |||| | | |||| ||| | ||||| | |||||| || || Sbjct 1352 ACACGTTGTCCC-TGAGACTGAACCTCATCTGCGCTCCAAAGAGCGACAAGGTGCCTGTC 1410 Query 30515 CCCGTCCTGTCTCCCCT 30531 ||||| | ||||||||| Sbjct 1411 CCCGTGCGGTCTCCCCT 1427 >seq17300 Length=26109 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 49127 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 49186 ||| ||||| || ||||| | |||||| | |||||| | ||| | ||| || || || Sbjct 14872 GTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCAGCGTCGATCACGCCCGCGCCCGT 14931 Query 49187 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 49246 ||| || || || || || || |||||||| | || ||||| | ||||| ||| | Sbjct 14932 GTCAATGAACTTCTTAAGTGCGAGGCCGGAGCGAGGCGCCACACGCGCGTAGCAGCCTGA 14991 Query 49247 GGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGTCGAAGGAGGGGACCACGAC 49306 ||||| | ||| ||||||||||||| || ||| || || || | ||||| |||| | Sbjct 14992 GGGCACCGCCACCACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCTGCGGGGATCACGGC 15051 Query 49307 CGGGTGAGCGGCCGCCAGGTC 49327 || ||||||| |||||| Sbjct 15052 GTCGTAGGCGGCCGACAGGTC 15072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406213674381036