Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq18510 145 7e-30 seq19195 138 1e-27 >seq18510 Length=33167 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| || || Sbjct 31489 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATCACCCTCGACGTGGAGCCCTCG 31548 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || || || || ||||| ||||| |||||||| || || || || Sbjct 31549 GACTCTATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAG 31608 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || |||| ||| | || | ||| |||||| Sbjct 31609 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 31668 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| || || |||| ||||| |||| |||||||| Sbjct 31669 ATCCAGAAGGAGTCGACGTTGCACCTGGTGCTGCGTCTGCGTGGTGGCAT 31718 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || ||||| || || Sbjct 31716 CATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACAATCACCCTCGACGTGGAGCCCTC 31775 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| ||||| | || || || || ||||| ||||| |||||||| || || || || Sbjct 31776 GGACTCTATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCA 31835 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || |||| ||| | || | ||| ||||| Sbjct 31836 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 31895 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||| || ||||||||||| || || |||| ||||| |||| ||||||| Sbjct 31896 CATCCAGAAGGAGTCGACGTTGCACCTGGTGCTGCGTCTGCGTGGTGGCA 31945 >seq19195 Length=70740 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||| |||||| | || || || || ||||| || Sbjct 21809 CGGCATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTCGACGTGGAGCC 21750 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| |||||||| || | || || || ||||| |||||||| || ||||| || || || Sbjct 21749 GTCGGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGA 21690 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || |||||||| || | ||||||||| || |||| ||| | || | ||| || Sbjct 21689 CCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTAAGCGACTA 21630 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||||||||| || | || | || ||||| |||| || || Sbjct 21629 CAACATCCAAAAGGAGTCTACGCTGCACCTAGTGCTGCGTCTGCGTGGCGG 21579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434812209236160