Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq5267 134 7e-27 >seq5267 Length=12072 Score = 134 bits (148), Expect = 7e-27 Identities = 396/602 (66%), Gaps = 30/602 (5%) Strand=Plus/Plus Query 66150 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66209 || |||||||| ||||||||||| || || || ||| | || ||| || | | Sbjct 6794 CGAGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACGACACTGGCACT----GAG 6849 Query 66210 GTG----GCCAATGCCCAGAAGGCCG---GTGGCAACGCTGCCTACATCGACGCTGAGCA 66262 || || | || |||||| ||| |||| | ||||| || || || ||||| Sbjct 6850 TTGCATTGCAGAAGCTCAGAAGACCGAGGGTGGAGTCTGTGCCTTTATTGATGCAGAGCA 6909 Query 66263 CTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT 66322 | | | ||| | | |||||||||||||| || || ||| ||||| || || Sbjct 6910 CGCTATTGACGCCCACTACGCCAAGGCGCTGGGCGTCGACATCGACGCGCTGTACGTCTC 6969 Query 66323 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 66382 ||||||||| | |||||| | || |||||||||| |||| ||| || |||||| | Sbjct 6970 ACAGCCGGACTCGGGCGAGGAAGCGCTGGAGATCGCTGACACTCTCATCCGGTCTGG--A 7027 Query 66383 GCTGTCCATC--GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 66440 || || ||| || || | ||| ||||||||| || |||||||| || ||||| || Sbjct 7028 GCAGTGGATCTGGTGGTGCTCGACAGTGTGGCGGCTCTTGTGCCGCGAGCTGAGCTGGAG 7087 Query 66441 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 66500 || || || || ||| || | | ||||| || || || ||| ||||| | ||| Sbjct 7088 GGTGAGATGGGAGACCAGCAGATTGCGCTGCAGGCTCGGCTTATGAGCCAGGCACTACGC 7147 Query 66501 AAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTG 66557 |||||||| || | | |||| |||| ||| | | | | | |||||| | Sbjct 7148 AAGCTCACGGGGTCGTTGTCCAAGTCCAACTGCACCATTA---TTTTCCTGAACCAGATC 7204 Query 66558 CGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAG 66614 ||| ||||| | || || | | || | |||||| | ||| || || |||| Sbjct 7205 CGCCAGAAGGTGGGTATCATCTTTGGGT--CACCCGAA-GTGACTTCC---GGTGGCACT 7258 Query 66615 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 66674 || || | | |||||| || || || ||||| |||| |||| | || ||||| Sbjct 7259 GCGCTGCGTTACTACGCGTCGGTGCGGCTGGATATCCGCCGCAAGACGGCCATCAAGGAG 7318 Query 66675 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 66734 ||||| | | || |||||| || ||| || || | |||||||||||||||| || Sbjct 7319 GGCGACCAAGTCGTGGGCAACGAAACGGTGGTAAAAGTAGCCAAGAACAAGCTGGCCTCG 7378 Query 66735 CC 66736 || Sbjct 7379 CC 7380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240902637438900