Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq17656 259 4e-64 >seq17656 Length=11375 Score = 259 bits (286), Expect = 4e-64 Identities = 434/623 (70%), Gaps = 6/623 (1%) Strand=Plus/Plus Query 6506 GGGAACGGTCG--GGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGT 6563 ||||| || || ||| || ||| ||||| || | || |||| | ||||||||||| Sbjct 733 GGGAATGGCCGTGGGGTTCGCGTG--AGCTGCTTCTGAAGAGGCTCAACGTGGTTCAGGT 790 Query 6564 AGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAG 6623 | | |||||| || || | | || | | || || || || ||| | || || | Sbjct 791 AAACATGCGCGTCACCAATCACGTGGATGAATTCACCTGGTTTCAGCCCGGCCACTTGTG 850 Query 6624 CGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGT 6683 | | | ||||||||| ||||| || ||||||||||||||||| || | ||||||| Sbjct 851 CCACTAGCCGCGTGAGCAGCGCGTAGCTTGCAATGTTGAACGGCACGCCGAGTCCCATGT 910 Query 6684 CTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGA 6743 | | || || || || | ||||||||| ||||| || | ||| |||||||| ||||||| Sbjct 911 CGGCTGAGCGCTGGTACATCTGGCAGGAGAGCTCTCCGTCCGCCACGTAGAACTGGCAGA 970 Query 6744 GGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCA 6803 |||| ||||| || ||||||||| ||||| ||||||||||| ||| | Sbjct 971 ACATGTGACACGGTGGCAGCGCCATCTCGTTCAGATCGGCGGGGTTCCACGCAGACAAAA 1030 Query 6804 CGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCC 6862 | |||| | ||| ||||| | || ||| ||||| | | || || |||||| Sbjct 1031 CAATCCGGCGGTCGGTCGGGTTGGTCCGCAGCTTGTGAATCACCT-CAGCAAGTTGGTCC 1089 Query 6863 GCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCAC 6922 | |||||||| | |||||||| | | || ||||| || |||||||| | |||| Sbjct 1090 ACACCCTGTCCAGTGTAGTCCGCATGCATGTCCGTATACTTGGCTCCAAAGTGGCGCCAC 1149 Query 6923 TGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCC 6982 ||||| ||||||||||| || | ||||||| | ||||| ||| ||||| || ||||| Sbjct 1150 TGGAAGCCGTAGACCGGTCCAAGGTCGCCCACTTCCCGCGATTCCAACCCTCGACTGTCC 1209 Query 6983 AGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTG 7042 | | | |||||||| || | |||||||||| | | || | ||| | Sbjct 1210 AAATACTCTCGAGATCCATTTCCGTCCCAGATGTGGATATCCTTCTGCTGCAGCGTGTGC 1269 Query 7043 GTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACA 7102 | |||||| | || || ||||||||||||||||||||| |||| || |||| | || Sbjct 1270 GCATTCGTGTCGCCACTAACGAACCACAGCAGCTCCTCGGCCACACCGCGCCAGAAGACG 1329 Query 7103 CGTTTCGTCGTCAGCAGCGGAAA 7125 || || ||||| |||||||| || Sbjct 1330 CGCTTGGTCGTGAGCAGCGGGAA 1352 Score = 259 bits (286), Expect = 4e-64 Identities = 434/623 (70%), Gaps = 6/623 (1%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || |||||||| ||||| || || || | |||| || |||| |||||||||||||||| Sbjct 1352 TTCCCGCTGCTCACGACCAAGCGCGTCTTCTGGCGCGGTGTGGCCGAGGAGCTGCTGTGG 1293 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||||| || || | |||||| | | ||| | || | | ||||||||| Sbjct 1292 TTCGTTAGTGGCGACACGAATGCGCACACGCTGCAGCAGAAGGATATCCACATCTGGGAC 1233 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 | | || |||||||| | | |||||| || ||||| ||| ||||| | ||||||| Sbjct 1232 GGAAATGGATCTCGAGAGTATTTGGACAGTCGAGGGTTGGAATCGCGGGAAGTGGGCGAC 1173 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 | || ||||||||||| ||||||||| | |||||||| || ||||| || | | Sbjct 1172 CTTGGACCGGTCTACGGCTTCCAGTGGCGCCACTTTGGAGCCAAGTATACGGACATGCAT 1113 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGCG 34518 |||||||| | |||||||| | |||||| || || | | ||||| ||| || | Sbjct 1112 GCGGACTACACTGGACAGGGTGTGGACCAACTTGCTG-AGGTGATTCACAAGCTGCGGAC 1054 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 ||||| ||| | |||| || ||| ||||||||||| ||||| ||| Sbjct 1053 CAACCCGACCGACCGCCGGATTGTTTTGTCTGCGTGGAACCCCGCCGATCTGAACGAGAT 994 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTG 34638 |||||| || ||||| |||| ||||||| |||||||| ||| | || ||||| ||||| Sbjct 993 GGCGCTGCCACCGTGTCACATGTTCTGCCAGTTCTACGTGGCGGACGGAGAGCTCTCCTG 934 Query 34639 CCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 |||| | || || || || | |||||||| | || ||||||||||||||||| || || Sbjct 933 CCAGATGTACCAGCGCTCAGCCGACATGGGACTCGGCGTGCCGTTCAACATTGCAAGCTA 874 Query 34699 CGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCA 34758 ||| ||||||||| | | || || || | ||| || || || || | | || Sbjct 873 CGCGCTGCTCACGCGGCTAGTGGCACAAGTGGCCGGGCTGAAACCAGGTGAATTCATCCA 814 Query 34759 TACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCA 34818 | | || || |||||| | |||||||||||| | |||| || | || ||||| Sbjct 813 CGTGATTGGTGACGCGCATGTTTACCTGAACCACGTTGAGCCTCTTCAGAAGCAGCT--C 756 Query 34819 ACGAGAGCCC--CGACCGTTCCC 34839 ||| || ||| || || ||||| Sbjct 755 ACGCGAACCCCACGGCCATTCCC 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448152951131760