Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq18510 158 3e-33 seq19195 149 1e-30 seq17350 141 2e-28 seq18987 87.8 4e-12 >seq18510 Length=33167 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | || ||||| || |||||||| || || || || | || || Sbjct 31700 AGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 31641 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || |||||||| |||| |||||||||||| Sbjct 31640 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCC 31581 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || || || | ||| ||| || || ||||| ||||||||| Sbjct 31580 TGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTGATCGTC 31521 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || ||||| || || | |||||| || Sbjct 31520 TTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTT 31486 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | || ||||| || |||||||| || || || || | || || Sbjct 31928 AGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 31869 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || |||||||| |||| |||||||||||| Sbjct 31868 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCC 31809 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || || || | ||| ||| || || ||||| ||||| ||| Sbjct 31808 TGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAGGGTGATTGTC 31749 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 31748 TTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31717 >seq19195 Length=70740 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| ||||||||||| || || || || | || || Sbjct 21594 AGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCC 21653 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | || || |||||||| || | || |||||||| Sbjct 21654 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 21713 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || |||||||| ||||| | ||| || || || ||||| ||||||||| Sbjct 21714 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTC 21773 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | |||||| Sbjct 21774 TTGCCCGTCAACGTCTTCACGAAGATCTGCAT 21805 Score = 114 bits (126), Expect = 3e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 210930 TGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGG 210989 |||||||| || || || || | || || |||||||||||||| |||||||| | Sbjct 22077 TGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAA 22136 Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || || |||||||| || | || |||||||| ||||| || || ||||| || ||||| Sbjct 22137 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATC 22196 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 | ||| || || || ||||| ||||||||||| ||||| | ||||| || || Sbjct 22197 GAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAA 22252 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 21822 AGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCC 21881 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | || || |||||||| || | || |||||||| Sbjct 21882 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 21941 Query 211023 TGGATCTTTTGTTTCAC 211039 ||||| || || ||||| Sbjct 21942 TGGATTTTCTGCTTCAC 21958 >seq17350 Length=35721 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || |||| || || | || || || ||||||||||| |||||||| Sbjct 6405 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6464 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || |||||||| || | || |||||||||||||| || || || ||||| || Sbjct 6465 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 6524 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || || || || || ||||| ||||| ||||| || ||||| ||||| Sbjct 6525 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 6584 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 6585 ATCTGCAT 6592 >seq18987 Length=31229 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || |||||||| || |||| ||| || | || || Sbjct 18050 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 17991 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||| |||||||| || || || |||||||| || | |||| Sbjct 17990 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCT 17940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158861903013545