Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq17350 113 4e-20 seq19195 104 2e-17 seq18510 84.2 2e-11 >seq17350 Length=35721 Score = 113 bits (124), Expect = 4e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || || | || || || |||| || ||||| ||||| || || || Sbjct 6405 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6464 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 || ||||||||||| | || | || ||| |||||| ||||||||| |||| ||| | | Sbjct 6465 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CGTTGTC 6523 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | ||| || ||||||||||| |||||| | || |||||||| || || ||||| Sbjct 6524 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 6583 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 6584 GATCTGCAT 6592 >seq19195 Length=70740 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| ||||| || || || ||| || || || |||| || ||||| Sbjct 21603 TGCAGCGTAGACTCCTTTTGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGC 21662 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || | |||||||||||| | ||| | || ||| ||||| ||||||| Sbjct 21663 TTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTC 21722 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || || | ||| | | | || || || ||||||||| | |||||| | || ||||| Sbjct 21723 TGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGT 21781 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||| || || ||||| ||||| Sbjct 21782 CAACGTCTTCACGAAGATCTGCAT 21805 Score = 82.4 bits (90), Expect = 7e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 39100 TGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGA 39159 || || || || ||| || || || |||| || ||||| ||||| || || || | | Sbjct 22077 TGGATGTTGTAGTCGCTTAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAA 22136 Query 39160 CGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC 39219 ||||||||||| | ||| | || ||| ||||| ||||||||| || | | | | | Sbjct 22137 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATC 22196 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 | || || ||||||||| | |||||| | || ||||||| ||| || || |||| Sbjct 22197 GAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGA 22254 >seq18510 Length=33167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || | ||| ||| || || || || || ||| || || || |||| || Sbjct 31698 CACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 31639 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | || | || || |||||| Sbjct 31638 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTG 31579 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACT 39251 || ||||| || | | | | || || | ||| ||||||||| | ||||| | Sbjct 31578 AATCTTCTGCTTCA-CATTGTCA--ATAGAGTCCGAGGGCTCCACGTCGAGGGTGATCGT 31522 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||||||||| || || ||||| |||||||| Sbjct 31521 CTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTT 31486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429443343045629