Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2291 181 3e-40 seq18510 154 4e-32 seq19195 143 6e-29 seq2673 132 1e-25 seq17350 111 4e-19 seq13414 109 1e-18 >seq2291 Length=2664 Score = 181 bits (200), Expect = 3e-40 Identities = 213/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| |||||||||||| | ||||| | |||||| | | Sbjct 1151 AACTTTATATTTAATTTTTAGTGCTTTTTCTGGTATTGTTGGTACAACATTTTCACTTTT 1210 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||| | || ||| |||||| || | |||||| ||| | || Sbjct 1211 AATTCGTATGGAATTATCACAACCAGGTAATCAAATTTTAATGGGTAATCATCAATTATA 1270 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || ||| |||| || ||||| ||| ||||| | || || || |||||||| | | | Sbjct 1271 TAATGTAATTGTTACTGCACATGCTTTTATTATGGTATTTTTCTTAGTTATGCCTGCTTT 1330 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || || || || ||||| || ||||||||||||| |||||||| ||||||||||| Sbjct 1331 AATTGGTGGATTTGGTAATTGGTTTATTCCTTTAATGATAGGTGCTCCAGATATGGCTTT 1390 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| | | || ||||| |||||||| ||| |||| || || ||||| Sbjct 1391 TCCTCGTATGAATAATATTAGTTTTTGGTTATTACCACCATCATTATT 1438 Score = 107 bits (118), Expect = 5e-18 Identities = 87/104 (84%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| |||||||| || |||||||||||||| | | |||||| ||||||||||| Sbjct 1835 TTCTGGATGTCCAAAAAACCAAAATAAATGTTGATATAATACAGGATCACCTCCGCCTGA 1776 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| ||||| ||||||||||||||||| |||| Sbjct 1775 AGGATCATAAAATGATGTATTTAAATTTCTATCAGTTAATAACA 1732 Score = 100 bits (110), Expect = 7e-16 Identities = 132/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | |||||| || ||||||||||| | || || | |||||| Sbjct 1657 AAAGGTAATCTATGAAAACTTAAACCTGGAGCTCTCATATTATAAATAGTTGAAATAAAA 1598 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| || ||||| || || | | |||||||||||| || |||||||| Sbjct 1597 TTAATAGCACCTAACAGTGAAGACATTCCGGATAAATGTAAACTAAAAATAGCTAAATCT 1538 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| | || ||| || || |||||||| || || Sbjct 1537 ACCGAAGGTCCTGAATGTGCTTGTACACTTGA---TAAAGGTGGATAAACTGTCCAACCT 1481 Query 371542 GT 371543 || Sbjct 1480 GT 1479 >seq18510 Length=33167 Score = 154 bits (170), Expect = 4e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| | || || || || |||| ||||| ||| || || Sbjct 31710 ACGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 31651 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || ||||| |||||||| || Sbjct 31650 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCC 31591 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| ||||||||| || || | ||| |||| |||||||| | Sbjct 31590 TTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAG 31531 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||||||||||| || || | ||| | ||||| || Sbjct 31530 GGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTT 31486 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| | || || || || |||| ||||| ||| || || Sbjct 31938 ACGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 31879 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || ||||| |||||||| || Sbjct 31878 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCC 31819 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| ||||||||| || || | ||| |||| |||||||| | Sbjct 31818 TTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACGTCGAG 31759 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||||| || || | ||| | ||||| Sbjct 31758 GGTGATTGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 31717 >seq19195 Length=70740 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || ||||||| ||||| ||| | || Sbjct 21584 ACGCAGACGCAGCACTAGGTGCAGCGTAGACTCCTTTTGGATGTTGTAGTCGCTTAGCGT 21643 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| | || || ||||| || || || || Sbjct 21644 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATGCC 21703 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||| || |||||||| ||||| | ||| || | |||||||| | Sbjct 21704 CTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 21763 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||||||||| || || | ||| | ||||| Sbjct 21764 CGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 21805 Score = 125 bits (138), Expect = 2e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| | || || ||||| || || || || ||| Sbjct 22104 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCC 22163 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||||||||| || ||||||||| ||||| | ||| || | |||||||| | |||| Sbjct 22164 TTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTG 22223 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 ||||||||||||||||| || || | ||| Sbjct 22224 ATCGTCTTGCCCGTCAACGTCTTCACGAA 22252 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || |||| ||||| ||| | || Sbjct 21813 CGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTG 21872 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| | || || ||||| || || || || Sbjct 21873 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGGATGCCC 21932 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCAC 225638 |||||||||||||| || |||||||| Sbjct 21933 TCCTTGTCTTGGATTTTCTGCTTCAC 21958 >seq2673 Length=1405 Score = 132 bits (146), Expect = 1e-25 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||||||||| || |||||||| ||||| |||||||| ||||||||||| Sbjct 982 AATATTTGACCATCAGTAATTGAAATAACATTAGTAGGAATATAAGCTGAAACATCACCA 923 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || |||||| || |||| || |||||||||| |||||||| Sbjct 922 GCTTGAGTTTCAATAATAGGTAATGCAGTTAAAGAACCACCACCAATTTTTTTATT 867 >seq17350 Length=35721 Score = 111 bits (122), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| ||||| || || ||| Sbjct 6435 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 6494 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| || || ||| |||| || | |||||||| | |||| Sbjct 6495 TTGTCCTGGATTTTCTGCTTGACGTTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTG 6554 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||||||||||| Sbjct 6555 ATGGTCTTGCCCGTCA 6570 >seq13414 Length=454 Score = 109 bits (120), Expect = 1e-18 Identities = 101/125 (81%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 228 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 287 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| ||| | || ||||||||||| |||| || ||||||| ||| |||||||||| | Sbjct 288 CCAA-ACTTTTTTAAAGGCAGCAGTGGGGAATTTTGGACAATGAGCGGAAGCTTGATCCA 346 Query 6865 GTAAT 6869 | ||| Sbjct 347 GCAAT 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192232749315902