Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq17656 183 2e-41 seq17300 111 1e-19 >seq17656 Length=11375 Score = 183 bits (202), Expect = 2e-41 Identities = 447/680 (66%), Gaps = 19/680 (3%) Strand=Plus/Plus Query 29635 GAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTG 29694 |||||| || || || || ||||||| ||||| || || || || || | ||| Sbjct 756 GAGCTGCTTCTGAAGAGGCTCAACGTGGTTCAGGTAAACATGCGCGTCACCAATCACGTG 815 Query 29695 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29754 || || || || |||| ||||||| || || |||| | |||||| || | ||| Sbjct 816 GATGAATTCACCTGGTTTCAGCCCGGCCACTTGTGCCACTAGCCGCGTGAGCAGCGCGTA 875 Query 29755 GCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814 ||| || ||||| || ||||| ||||| |||||||| |||| | |||||| | |||||| Sbjct 876 GCTTGCAATGTTGAACGGCACGCCGAGTCCCATGTCGGCTGAGCGCTGGTACATCTGGCA 935 Query 29815 CGAGAGCTCTCCGTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGC 29871 |||||||||||||| |||||| ||||| | ||||| || ||||| || || || Sbjct 936 GGAGAGCTCTCCGTCCGCCACGTAGAACTGGCAGAACATG---TGACACGGTGGCAGCGC 992 Query 29872 CATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT 29931 ||| || || ||||||||| ||| ||| | || || | ||| ||||| Sbjct 993 CATCTCGTTCAGATCGGCGGGGTTCCACGCAGACAAAACAATCCGGCGGTCGGTCGGGTT 1052 Query 29932 GTTCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGT 29987 | ||| | || | ||| | || || || ||||| ||| || | ||||| Sbjct 1053 GGTCCGCAGCTTGTGAATCAC----CTCAGCAAGTTGGTCCACACCCTGTCCAGTGTAGT 1108 Query 29988 CTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30047 | | | || || | ||||||||| ||||| ||||||| Sbjct 1109 CCGCATGCATGTCCGTATACTTGGCTCCAAAGTGGCGCCACTGGAAGCCGTAGACCGGTC 1168 Query 30048 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30107 | ||||| ||| |||||| || || || | |||||||| | |||| || || | Sbjct 1169 CAAGGTCGCCCACTTCCCGCGATTCCAACCCTCGACTGTCCAAATACTCTCGAGATCCAT 1228 Query 30108 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167 | |||||||||| | | |||||| ||| | | || ||| || || | Sbjct 1229 TTCCGTCCCAGATGTGGATATCCTTCTGCTGCAGCGTGTGCGCATTCGTGTCGCCACTAA 1288 Query 30168 CGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGG 30227 ||||||||||||||||||| | || | ||| ||||| | |||||||||||| || | Sbjct 1289 CGAACCACAGCAGCTCCTCGGCCACACCGCGCCAGAAGACGCGCTTGGTCGTGAGCAGCG 1348 Query 30228 GAAAC----TGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCC 30283 | ||| |||||| |||| | | ||||| ||| | ||||| | |||||| || Sbjct 1349 GGAACACGTTGTCCC-TGAGACTGAACCTCATCTGCGCTCCAAAGAGCGACAAGGTGCCT 1407 Query 30284 GTGCCTGTCCTGTCTCCCCT 30303 || || || | ||||||||| Sbjct 1408 GTCCCCGTGCGGTCTCCCCT 1427 >seq17300 Length=26109 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 49932 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 49991 ||| ||||| || ||||| | |||||| | |||||| | ||| | ||| || || || Sbjct 14872 GTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCAGCGTCGATCACGCCCGCGCCCGT 14931 Query 49992 GTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 50051 ||| || ||||| || || || |||||||| | || ||||| | ||||| ||| | Sbjct 14932 GTCAATGAACTTCTTAAGTGCGAGGCCGGAGCGAGGCGCCACACGCGCGTAGCAGCCTGA 14991 Query 50052 GGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAGGGGACCACGAC 50111 ||||| | ||| | ||||||||||| || ||| || ||||| | ||||| |||| | Sbjct 14992 GGGCACCGCCACCACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCTGCGGGGATCACGGC 15051 Query 50112 GGGGTGAGCGGCCGCCAGGTC 50132 | || ||||||| |||||| Sbjct 15052 GTCGTAGGCGGCCGACAGGTC 15072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406066509423238